Polaribacter reichenbachii: BW723_16685
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Entry
BW723_16685 CDS
T04692
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prn
Polaribacter reichenbachii
Pathway
prn03030
DNA replication
prn03410
Base excision repair
prn03420
Nucleotide excision repair
prn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BW723_16685
03410 Base excision repair
BW723_16685
03420 Nucleotide excision repair
BW723_16685
03430 Mismatch repair
BW723_16685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prn03032
]
BW723_16685
03400 DNA repair and recombination proteins [BR:
prn03400
]
BW723_16685
Enzymes [BR:
prn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BW723_16685
DNA replication proteins [BR:
prn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BW723_16685
DNA repair and recombination proteins [BR:
prn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BW723_16685
NER (nucleotide excision repair)
GGR (global genome repair) factors
BW723_16685
MMR (mismatch excision repair)
DNA ligase
BW723_16685
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BW723_16685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
5_3_exonuc
DNA_ligase_A_M
AphA_like
Motif
Other DBs
NCBI-ProteinID:
APZ47827
UniProt:
A0A1B8U5U5
LinkDB
All DBs
Position
complement(3917321..3919321)
Genome browser
AA seq
666 aa
AA seq
DB search
MTIQQKIESLRDELNAHNYNYYVLDNATISDFEFDVKLKELEKLELENPQFLDVNSPTQR
VGGTITKNFNTVTHKNRMYSLDNSYSKEDLLDWEKRVQKILGTTETEYTCELKFDGASIN
LTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSIKKDFVENFEMRGEIILPIEGFNK
MNEERVANGEEEYRNPRNTASGSLKLQDSTEVAKRPLDCLLYQVVTSERKYKTHFESLEN
ARKVGFKVPETIILAKSIDQVFQFVNFWDTKRHDLPYETDGIVIKVNNLQQQEELGYTSK
APRWAIAYKFKAEQVSTILNEITYQVGRTGAITPVANLEPVQLAGTTVKRASLHNADQIE
KLDIRVGDTVFVEKGGEIIPKIIAVDFTKRPENSEPTNYATNCPECKTPLIRTEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIHNYADLYDLKVEQVIPL
ERMAEKSAQNMISGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMSADLET
LIAVDEIGDRIAQSIINFSNDLNNIQLIQKLKSVAVQLEVSAKSLENQTDKLQGQIFVVS
GVFYQMSRNELKKAIEDNGGKVSSSISKKTSFIVAGDNMGPSKLAKAETLGVPIITEQDF
IDKINS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaccattcaacaaaaaatagaatcacttcgtgatgaattaaacgcacataattataac
tattatgtgttagataatgcaacaatatcagattttgagtttgatgttaagcttaaagaa
ttagaaaaattagaattagaaaatccacagtttctagatgtaaactcgccaacccaaaga
gttggaggtacaattactaaaaactttaatacagtaactcataaaaacagaatgtattct
ttagacaattcctattctaaagaagacttgttagattgggaaaaacgagtacaaaaaata
ttaggcacaacagaaacagaatacacttgtgagttaaaatttgatggagcttctattaac
ctaacttacgaaaatggtcaatttgtaaaagcagtaacaagaggagatggttttcaagga
gatgaagttaccaataatattaaaacaataagatcaattccattatcaataaaaaaagac
tttgtagaaaacttcgaaatgcgtggcgaaatcattttgccaatagaaggttttaataaa
atgaacgaagaacgcgttgcaaatggagaagaagaatacagaaatccaagaaatacagca
agcggaagtttaaaattacaagacagtacagaagttgctaaaagacctttagactgttta
ttgtatcaagtagtaacatccgaaagaaaatacaaaacacatttcgaaagtttagaaaac
gcaagaaaagtaggttttaaagttccagaaacaataatattagcaaaatcaatagatcaa
gtttttcaatttgtaaatttctgggatacaaaaagacacgatttaccatatgaaactgat
ggaattgtaataaaagtaaacaacttacaacaacaagaagaattaggatatacatcaaaa
gccccaagatgggcaattgcttataaatttaaagcagaacaagtttcaactattttaaac
gaaattacatatcaagtaggtagaacaggtgcaataactccagttgcaaatttagaacca
gtgcaattagcaggtacaactgtaaaacgtgcgtctttacataatgcagatcaaatagaa
aaattagacattagagtaggagatactgtatttgtagaaaaaggaggcgaaatcattcca
aaaattattgctgtagattttacaaaacgtccagaaaactcagaacctacaaattatgct
acaaattgccctgaatgcaaaacacctttaataagaacagaaggagatgcaaaacactat
tgcccaaatgaatttggttgcgcacctcaaataacaggtagaattcagcattttatttca
agaaaagcaatggatattgatggtcttggaggagaaactgtagatttattacgtaaagaa
ggtttaattcataattacgcagatttatacgatttaaaagtagaacaagttattccttta
gaaagaatggcagagaaatctgctcagaatatgatttcaggaatcgaaaaatcaaaagaa
ataccttttgagaaagtattatttgcacttggcattcgttttgtaggtgaaacagtagct
aaaaagttagcaaaacattttaagtctatagataatttaatgagtgcagatttagaaacc
ttaattgctgttgatgaaataggagatagaattgcacaaagcattatcaatttttcaaac
gacttaaataacattcaattaattcagaaattaaaatcagtagctgtacaattagaagta
tctgcaaaaagtctagaaaatcaaacagataaattacaaggacaaatatttgtggtttct
ggagttttttatcaaatgagcagaaacgaattaaagaaagcaatagaagataatggaggt
aaagtaagttcttcaatttctaaaaagacaagctttattgttgcaggcgataatatgggg
ccttcaaaattagctaaagcagaaactttaggtgtaccaattataactgagcaagatttt
atagataagataaatagttaa
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