Prevotella sp. oral taxon 299: HMPREF0669_01637
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Entry
HMPREF0669_01637 CDS
T02809
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pro
Prevotella sp. oral taxon 299
Pathway
pro03030
DNA replication
pro03410
Base excision repair
pro03420
Nucleotide excision repair
pro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0669_01637
03410 Base excision repair
HMPREF0669_01637
03420 Nucleotide excision repair
HMPREF0669_01637
03430 Mismatch repair
HMPREF0669_01637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pro03032
]
HMPREF0669_01637
03400 DNA repair and recombination proteins [BR:
pro03400
]
HMPREF0669_01637
Enzymes [BR:
pro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF0669_01637
DNA replication proteins [BR:
pro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF0669_01637
DNA repair and recombination proteins [BR:
pro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF0669_01637
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0669_01637
MMR (mismatch excision repair)
DNA ligase
HMPREF0669_01637
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0669_01637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
PADR1_Zn_ribbon
Auto_anti-p27
zf-tcix
BRCT_2
DUF3966
Motif
Other DBs
NCBI-ProteinID:
EFC70336
UniProt:
D3IDY3
LinkDB
All DBs
Position
407747..409747
Genome browser
AA seq
666 aa
AA seq
DB search
MTTEQERIIELRKELHQHNYNYYVLNAPQIDDFTFDALLHELQSLENAHPEMYDANSPTQ
RVGSDLQESFEQVVHVYPMLSLSNTYNKQEVADFYNTVSKFLNGEEFEICCELKYDGLSI
SLRYEDGKLVRAVTRGDGTRGDDVTANVKTIKTIPLVLQGNDYPAVFEMRGEVLMPWKVF
DKLNEERRQQEEPLFANPRNAASGTLKSLNPVLVAKRSLDAYLYYLLGEDINIDGHFERL
EAAKRWGVKIGEGMRKVSSLEDIYAFIDYWDVERKNLPVATDGIVLKVNSLKQQQSMGFT
AKNPRWAIAYKFKAERELTKLESVSYQVGRTGTITPVANMEPVLLAGTVVKRATLNNEDF
IKSFDLHIGDYVYVEKGGEIIPKIVGVELSKRTEGMQPIEFIKTCPECGTQLVRYEGQAA
YYCPNDMGCPPQIKGKIEHFIARKAMNIDSLGPETIDSYYNKGLIKDVADLYCLAIDDIN
EGGAHQKSAKKVIDAIEKSKQVPFDRVLFALGIRFVGETSARLLARKFNDINSLRNATAA
QLLEVEGVGDIIATSVVTFFSDEKNIALIERLESYGLQMAMPVMDEGPKGNVLEGKTIVI
SGIFTHHSRDEYKAMIEQLGGKNTGSISAKTSFVLAGDNMGPSKLQKAESLGVKILSEDE
FLEMIK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgaacaagaaagaataatagaactgcgcaaagaactgcatcagcacaactat
aattattatgtgttgaacgccccacaaatcgacgattttaccttcgatgcattgttgcac
gagctacaaagtttagagaatgcacatcctgagatgtatgatgccaactcaccaacgcaa
cgagtgggaagcgatttgcaagagtctttcgagcaagtggtacatgtttatcccatgcta
tcactctcgaatacctataataaacaagaagttgcagatttttacaacaccgtttcaaag
ttcttgaatggtgaagagttcgaaatttgttgcgagttgaaatacgatggcttatctatt
tcattgcgatatgaagatggaaagcttgtaagagcagtcactcgaggtgatggaacacgt
ggagatgatgtcacagcgaatgtaaaaaccatcaaaaccataccccttgtgttgcaagga
aacgattatccagcagtgtttgagatgcgtggagaggtgctaatgccatggaaagtattc
gataaactcaatgaagagcgtcgccaacaagaagagcctttatttgcaaatccacgcaat
gcggcctcgggaacacttaaaagtttaaacccagtattggttgcaaagcgttcattagat
gcctacttatattatttattgggcgaagatatcaacatagatggtcactttgagcgttta
gaagcagccaaacgatggggcgttaagataggcgaaggaatgagaaaagtgtcttcttta
gaagatatatatgcctttatcgattattgggacgttgaaagaaagaacctaccagtggca
actgacggtatagttcttaaggttaattcgctcaaacagcaacaaagtatgggctttaca
gcaaagaatccacgttgggctattgcgtataagttcaaagcagagcgtgagttaacgaag
ctagagagcgtttcttatcaggttggacgtacgggaacgattactccagtggctaatatg
gaacccgttttacttgctggaacggtggtgaaacgtgccacattgaataacgaagacttt
attaaaagctttgatttacatattggcgactatgtatatgtagagaaaggcggagagatt
atacctaaaattgtgggtgtagaactaagtaaacgcacagaaggaatgcaaccaatagaa
ttcattaagacatgtcctgagtgcggaactcagctcgttcgatatgaaggacaggctgct
tattactgcccaaatgatatgggttgccctccacaaataaagggaaagatagaacatttc
attgctcgtaaggccatgaatattgatagtttaggtcctgaaacaatcgattcgtattat
aacaaaggattgattaaagatgttgccgacttgtattgtcttgcaattgacgatattaat
gaagggggagcgcatcaaaaatcagcaaaaaaggtgatagatgctatcgaaaagtcgaag
caagtgccctttgatagagtgttatttgccttaggaatacgttttgttggtgaaacttct
gcacgtttattggctcgaaaattcaacgatatcaattccttacgcaacgcaactgcagct
caactacttgaagttgagggagtaggagatatcattgcgacaagtgttgtgaccttcttt
tccgacgaaaagaatattgctttgatagaaagattagagagttacggactgcaaatggct
atgcctgtgatggacgaagggcctaaaggcaatgtgttagaaggcaaaaccattgttatt
agtgggatctttacacaccattctcgtgacgaatacaaagcaatgatagagcaattagga
ggtaaaaatacaggaagtattagcgcaaaaaccagttttgtgcttgcaggagacaatatg
gggccatctaaattgcagaaagcagagtcgcttggagtgaagattttaagcgaagatgaa
ttcttagaaatgattaagtag
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