Phodopus roborovskii (desert hamster): 127220240
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Entry
127220240 CDS
T08852
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
127220240 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prob03400
]
127220240 (Lig4)
Enzymes [BR:
prob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127220240 (Lig4)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
127220240 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
RTT107_BRCT_5
HTH_Tnp_Tc3_2_like
Motif
Other DBs
NCBI-GeneID:
127220240
NCBI-ProteinID:
XP_051037924
UniProt:
A0AAU9Z703
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MATSQTSQIVAAHVPFADLCSTLERIQKSKDRAEKIRHFKEFLDSWRKFHDALHKNKKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPSGART
DAGDFALIAYFVLKPRCLQKGSLTVHQVNELLDLVASNNSGKRKDLVKKSLLQLITQSSA
LEQKWLIRMIIKDLKLGISQQTIFNVFHSDAVELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADVERVEKDMKQQSFYIETKLDGERMQMHKDGTVYRYFSRNGYNYTD
QFGASPQEGSLTPFIHDAFQADVQVCILDGEMMAYNPTTQTFMQKGVKFDIKRMVDDSDL
QTCYCVFDVLMVNNKKLGRETLRKRYDILNGTFKPIQGRIEIVQKKLAHTKNEVVDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKGSRGGMM
SHFLCAVAEKPPHGERPSAFHTLCRVGSGYTMKELYDLGLKLAKFWKPFHKKSPPSSILC
GAEKPEVYIEPYNSVIVQIKAAEIVPSDMYKTGTTLRFPRIEKIRDDKEWHECMTLDDLE
ELRRKASGKLATKHLHVGDDDEPREKRRKPVSKMKKTIGIIDHLKAPNLSNISKVSNIFE
DVEFCVMSGLESYPKTDLENRIAELGGYVVQNPGPDTYCVIAGCENIRVRNIISSDRYDV
VKPEWLLECFKMKTCVPWQPRFMIHMCPSTKQHFAREYDCYGDSYFVDTDLDQLKEVFLG
IKKLSEQQTPEEMAPVIADLEYRYSWDHSPLCMFRHYTIYLDVYAVINDSNSKIEATRLD
VTALELRFHGAKVVSCLSEGVSHVIVGEDQSRVLDLKVFRRTLKKKFKILQEHWVTDSVD
KGELQEENQYLL
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggccacttcacaaacttcacaaattgttgcagctcatgtcccctttgcagatttatgt
tctacgttagaacggatacagaaaagtaaagaccgtgcagaaaagatcaggcacttcaag
gaatttttagattcttggagaaaatttcatgatgcccttcacaagaacaagaaggatgtt
acggattctttttacccagcgatgagactcattcttcctcagttagaaagagagaggatg
gcttatggaatcaaagaaaccatgctcgctaagctttacattgaactgttgaatttgcca
agagaaggcaaggatgccctgaagctcctgaattatcgaacacctagtggagctcgcacg
gatgctggggactttgcattgattgcgtactttgtgttgaagccaaggtgcttacagaaa
ggaagcttaactgtacatcaagtaaatgaactcttggacttagtcgccagcaataattct
ggcaaaagaaaagacctagtgaaaaagagccttcttcaattaataacccagagttcagcc
cttgagcaaaagtggctgattcgcatgattattaaggacttgaagcttggtatcagtcag
caaactatatttaacgttttccacagtgatgcagttgagttgcacaatgtcaccacagat
ctggaaaaggtctgtaggcagctgcacgacccctctgtagggctcagtgatatctccatc
actctcttttctgcctttaaaccaatgctcgccgccatagcagacgtggagcgcgtagaa
aaggacatgaagcagcagagtttctacatcgaaaccaagctggatggggaacgcatgcag
atgcacaaagatgggacggtatatcggtacttctccagaaatggctacaactacactgat
cagttcggtgcatctccacaggaaggctctctcaccccattcattcatgatgcattccag
gcagacgtgcaagtatgcatccttgatggtgagatgatggcctacaacccgaccacacag
actttcatgcaaaagggggtcaaatttgatatcaaaaggatggtggatgattccgactta
cagacatgttactgtgtttttgatgtgttgatggttaataataagaagctagggcgtgag
actctgaggaagaggtatgatatccttaatggtacttttaaacccatccaaggtcgaata
gaaatagtgcagaaaaagctagctcatacgaagaatgaagtagtggatgcattaaatgaa
gctatagataagagagaggagggtatcatgattaaacaccctctgtccatctacaagcca
gacaaaagaggtgaagggtggctaaaaattaaaccagagtatgtcactggattaatggat
gaattagacctcttaattgtggggggctactggggtaaaggttcacgaggtggcatgatg
tctcactttttgtgtgcagtggcagagaagccccctcatggtgagaggccatctgcattc
catactctctgccgtgttggatcaggatataccatgaaagaactctatgatcttggctta
aaattggccaaattctggaaaccctttcataagaaatccccaccgagtagcattttatgt
ggagcagagaagccagaagtgtacatcgagccctataactctgttattgttcagattaag
gcagcagagattgtccccagtgacatgtacaagactggaaccaccttgcgcttcccacgt
atcgagaagatcagagatgacaaagagtggcatgaatgcatgactctggatgacttggaa
gagctgaggaggaaagcatctgggaaacttgccaccaaacaccttcatgtaggtgatgat
gatgaacctagagaaaagaggcggaaacctgtctccaaaatgaagaaaaccattggaatt
attgaccacttgaaagcgcctaacctttctaacataagcaaagtttctaatatatttgaa
gatgttgagttttgtgtcatgagtgggttggagagttatcccaagactgacctagagaac
agaattgcagaattgggtggttatgtagtgcagaatccaggcccagacacgtactgtgtg
attgcagggtgtgagaacataagagtgagaaacattatctcttcagatcgatatgatgtt
gtcaagcctgagtggcttttagagtgttttaaaatgaaaacatgtgtgccatggcaaccc
cgctttatgattcacatgtgcccatcaacaaagcagcattttgcccgtgaatatgattgc
tatggtgatagctattttgttgatacagatttggatcaactgaaagaagtgtttttagga
attaagaaactcagtgagcagcagactccggaagagatggcccctgtgattgccgattta
gaatatcgttattcctgggaccactctcctctctgtatgtttcggcactacaccatttat
ctggacgtgtatgctgttattaatgactcgaattccaaaattgaagcaacaagattagat
gttacagcacttgaactgcggtttcatggagccaaggtagtgtcctgcttatctgaggga
gtttctcatgtaatcgttggggaggatcagagccgagtcttggacttaaaagttttcagg
agaactcttaagaaaaagtttaaaatacttcaagaacattgggtgaccgattcagtagac
aagggtgaattgcaggaggaaaatcagtatttgctttag
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