Phodopus roborovskii (desert hamster): 127226788
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Entry
127226788 CDS
T08852
Symbol
Smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
prob03036
]
127226788 (Smchd1)
03400 DNA repair and recombination proteins [BR:
prob03400
]
127226788 (Smchd1)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
127226788 (Smchd1)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
127226788 (Smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
127226788
NCBI-ProteinID:
XP_051046881
LinkDB
All DBs
Position
Unknown
AA seq
2006 aa
AA seq
DB search
MAATGARDPGGLSAGSGSDAGVDGCRTVYLFDRRGKESELGDRALQVSERAGYAGLRASV
CQTIGISSEEKFVITTTSRKEITCDNFDETVKDGATLYLLQSVDQSLVTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFAFAELIDNSLSATSRNVGVRRIQIKLLFDDTQGKPAV
AVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLAKEDFEKKEKNKEAIYSGYIRNRKPADSVHITN
DDERFLHNLIAEEKEKDSFTTVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGN
EKNTAKEVGPSNNIDIEISLFEKGKTPKIVNLREIQDDMQTLYINTASDSFEFKAHFEGD
GVVEGVIRYHPFLYDRETYPDDPGFPSKLRDEEDDDDCFILERAARGKRPIFECFWNGRL
IPYTSVEDFDWCAPPKKRGLAPIECFNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTIFKGIITRPDLPSKKQGPWATYS
AIEWDGKIYKAGQLVKTVKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
IKTVPIAKLDRTVAEKTIKKYVEDEMARLPDRLSITWPEGDELLPNEVRPAGTPIGALRI
EILNKKGETMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRSLPSKAIKFSVKEGKPEKFSFGLLDSPFRVGVP
FNIPLELQDEFGHTTQLVSDVRPVIEASGLSLHYEEITKGPNCIIQGVVAKGSVNNCQGK
NFNLKVILPGLKEDSQTLKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVVDESDNI
TVQPKLIVHCKFLGAPGLPVYTVDCSSSGTSILTGSAIQVQNIKKDQTLTARIEIPSCKD
VSPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGERE
INITPSLAEKIKVNWTPEVNKEHLLQGLLPDVQVPTSVKDVRYCQVSYQDDHVSLESAFT
IRPLPDDPKHLKCELKGGKTVQMGQELQGEIVVMVADQYGNQISAFSSESLSTLSIAGVG
LDNSNLKTTLEAKTQSISVRGIRFTPGPPGHKDLCFTWREFSDFIRVHLVSGPPTKLLLI
DWPELKESIPVINGRQLQNPLIVQVCDQWDNPALVSNVKINLIKASNLRLLPANQQHKTD
DKGRANLGVFTVTAPRGEHALQIKGIYNKSTIEGPTIKLMIVPDPEKPIRLNVKYDKDAS
FIAGGTFTDFMVSVISEGGNVIKNINPTRISMKMWKLSSGMSQPPPNAETFSCSKIKDND
KEDGCFYFREKTVPSKVGTYCIQFDFMIDKTHVLNSEQVIIDVLPNQPMKLVPDVQPATP
AVSNVRLIANRTLVRDLHLSITDNYGNHTGKNLVGTVVATIKGFNEEDTDTPLFIGKVRT
LEFPFVNGSAEITTLVLAENSPGRDSTEYFIIFEPRLSTLPRTLEPYSLPFMFYNDVKKQ
QQMAALTKEKDQLSKSIVMYRSLFDANKQLVDEMKCQVEEAKLKEAQLRNELKAHNIDIP
IAQQISHIEALLEKKITEQNELKKKPRRSCTLPNYTKHGGAVLGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARSIYDETQGRQQVLPLDSIFRKTLPDWKRPLPHFRNGKLH
FKPFGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPRQCVVLGKQIDLLQQYRTAVCKLG
TVNQDLSNQLQYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTPTRKCNDSVCHTAKIELT
ECPIPTKKMRRESTRQNRRPKGDVPN
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgacgggcgcccgcgatcccggaggcctctcggcgggctccgggagcgacgcc
ggcgtcgacggttgtcggacggtgtacttgtttgaccggcgcgggaaggagtcggagctc
ggggatcgcgcattgcaggtctcggagcgtgcaggctacgcggggctgcgcgcttctgtg
tgtcagacaattggcatttcatctgaagaaaagtttgttattacaactacaagcagaaaa
gaaattacttgtgataattttgatgaaactgttaaagatggagccactctgtacctgctg
cagtcagttgaccagtcactagtgacagcaaccaaagagagaattgacttcctgccccac
tatgacactctggttaaaagtggcatgtatgaatattatgcaagtgaaggacagaatcct
ttgccatttgcttttgcagaattaatcgacaattcattgtcagctacttctcgtaatgtt
ggtgttaggagaatacagatcaaattgctgtttgacgatacacaagggaagcctgccgtt
gcagtggtggacaatggaagaggaatgacctctaaacagcttaacaactgggctgtgtat
aggttgtcaaaattcacaagacaaggtgactttgaaagtgatcattcagggtatgttcgg
ccagtaccagtaccacgcagcttgaacagtgacatttcctattttggtgttggaggcaaa
caggctgttttctttgttgggcaatcagccagaatgataagcaagcctgcagactcccag
gatgttcatgagcttgtgcttgctaaagaagattttgagaaaaaggaaaaaaataaagag
gcaatatatagtggatacattagaaacagaaagccagctgattctgttcacattacaaat
gatgatgaaagattcctacacaatcttattgcagaggagaaagagaaagatagctttact
actgtggttattacaggagtgcagccagaacacatacagtacttgaaaaattattttcat
ctttggacacgacagttaacgcatatttatcattactatattcatggaccaaaaggaaat
gaaaaaaatacagcaaaagaagttggaccttccaacaatattgatattgaaatttctttg
tttgaaaaagggaagacaccaaagattgtcaacctaagggagattcaagatgacatgcag
acattgtatataaacacagcatctgatagttttgagttcaaggctcactttgaaggagat
ggtgttgtggaaggggttatccggtatcatcccttcttatacgacagagaaacttacccc
gatgatccaggctttccatcaaaattaagagacgaagaagatgatgatgactgcttcatc
cttgagagggcggcgagagggaaaagacctatttttgagtgcttttggaatggacgctta
attccatacacatcagttgaagactttgactggtgtgctcctcctaagaagagagggctt
gccccaattgagtgctttaatagaatatctggtgcattattcactaatgacaaatttcag
gtcagcacaaataaactgacatttatggatcttgagctgaaattgaaagataagaacacc
ctttttacaagaattttaaatggacaggagcagagaatgaaaattgacagagaatttgct
ttatggctgaaggactgtcatgaaaagtatgacaaacaaataaaatttacaatttttaaa
ggaataattacccgtccagatcttccctctaaaaagcaaggcccgtgggcaacatactca
gctattgaatgggatggaaagatctacaaagcaggacaactggtcaagacagtgaagaca
cttcctctcttctatggaagcatagtaagatttttcctttatggcgatcatgatggagaa
gtatatgctacgggaggtgaagttcagattgcaatggaaccccaggcgctgtatgatgaa
ataaaaactgtgcccattgcaaagctggataggacagttgccgagaaaacaattaaaaag
tatgtagaagatgaaatggcaaggctccctgatagattgtctataacttggcctgaagga
gatgaattattgccaaatgaagttagacctgctggaaccccaattggtgcactacggatc
gaaatcctgaacaagaagggggaaaccatgcagaagcttccagggacaagtcacggagga
tccaagaagctgctggtggagctgaaagtcatattgcacacttcaagtggaaataaagaa
atcatttcacatatcagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aacattcagaaactgggtaattacacattgaaattacaagtggtattgaatgaaagtaat
gcagacacatatgcaggaagatcactgccatctaaggcaataaagttctctgttaaagag
ggcaagccagagaagttctcatttggtcttctggattccccctttcgtgttggagttcca
ttcaatattcctttggagttacaggatgaatttggtcatactacccaactagtatctgat
gtccggccagttattgaagcaagtggtctgtctttacattatgaagaaataaccaaaggc
ccaaattgtataattcaaggggttgtcgctaagggctcagttaacaattgtcaaggcaag
aattttaatctgaaggttattcttcccggtctaaaagaagattcacagactttgaaaatt
aggctgctacctggtcctcctcatcggctaaaagtgaaacctgattcagaaattctagtt
atagagaatggaacagctttcccatttcaagtggaagttgtggatgagtccgacaacata
acagtacaaccaaagctgattgtccactgtaagtttttaggtgctccaggcctaccagtc
tacactgtggattgcagtagctctgggaccagcatcctaacagggtcagcaattcaagtt
cagaacattaagaaagatcagacactgaccgccaggattgagatacctagttgtaaagat
gtgtcacctgtggaaaagactatcaagttacttcccagtagccacgttgctcgcctgcag
atatttagtgtggagggacaaaaggcgatccagatcaaacatcaggatgaggttaattgg
atagcaggagatgtaatgcgaaatctaatttttcaaatgtatgatgaaggagaaagagaa
atcaatattacaccatctttggcagaaaaaattaaagttaactggactcctgaggttaac
aaagaacacctgctacaaggtctgcttcctgatgtgcaagtaccaacatctgtgaaagac
gtgcggtattgccaggtttcttaccaggatgaccatgtgtctctggaaagtgcctttaca
atcaggccacttcctgatgatcccaaacatttgaaatgtgagttaaaaggaggtaaaacg
gtgcagatgggccaggagcttcaaggagaaatagttgttatggttgcagatcaatacgga
aatcagatctcagctttttcatcggagtctttgtctacgttgtcaattgctggagttgga
cttgataactctaacttgaagaccactttggaggccaaaacacagagcataagtgtgcga
ggcatcaggtttactcccggtcctcctgggcataaggatctgtgttttacttggcgagag
ttttctgactttatacgtgtgcaccttgtttctggacctccaaccaagctgcttctcatc
gactggccagagctaaaagagtccattccagtcatcaatggaagacaattacagaatcct
ctgattgttcaagtttgtgatcagtgggataatcctgcattagtctccaatgttaaaata
aatctcataaaagctagcaatttaaggctattacctgcaaaccagcagcataaaacggat
gataagggcagagctaatctgggggtgttcactgttactgctccaaggggagaacatgct
ctgcagattaaaggcatctataacaagagcaccatagaaggacctacgattaaattaatg
attgttccagaccctgagaagcccattcggctcaatgttaaatatgacaaggatgcttct
tttatagcaggtggcacattcactgatttcatggttagtgtgatctctgaaggtggtaat
gtcatcaaaaatattaatccaacacgcatttccatgaagatgtggaagctgtccagtggc
atgagccagccaccaccaaatgcagaaacatttagttgtagtaaaataaaagacaatgac
aaagaagatggctgcttttatttcagggaaaaaacagtccctagcaaagttgggacctac
tgtatacagtttgattttatgatcgataaaacacatgtgctcaacagtgaacaggttata
attgatgttctacctaatcagcctatgaagttggttcctgatgtccaaccagctacccca
gctgtttctaatgttcggttaattgccaacaggaccttggtcagagatctgcatctcagt
attacagataattacggtaatcatactggaaagaacttggttggtactgtagtagctacc
attaaaggttttaatgaggaggatacggataccccactcttcatcgggaaagttaggaca
cttgaatttccctttgtgaatggatctgctgaaatcacaactctagtgctggccgaaaac
agtcctggaagggatagtactgaatattttattatctttgagcctcggctatcaacttta
ccaagaacattagagccatacagcctgccatttatgttttacaacgatgttaaaaagcag
caacaaatggcagcacttacaaaagagaaggaccagttatctaagtccatcgtcatgtac
agaagtctctttgatgccaacaagcagcttgttgatgaaatgaaatgccaagttgaagaa
gcaaaattaaaagaagcccagctgcgaaatgaactaaaagctcacaatattgatattcct
atagcacagcagatatctcacattgaagcacttttggaaaagaagataacagaacaaaat
gaacttaaaaaaaagcccagaagatcgtgtactcttccaaactacactaagcatggtgga
gctgttttgggaaagattgcacatctagcgcaaattgaagatgatcgagccgcgatggtt
atctcttggcatctggccagtgacatggactgtgtggtcaccctgaccactgacgcagcc
cgctctatctacgatgaaactcaaggtcgtcagcaggtgttgccccttgattctattttt
aggaaaactcttccagattggaaaagacctctacctcatttccgaaatggtaaattacat
tttaaaccctttggagatccagtctttgcccgagatttgttaacattcccagataatatc
gagcattgtgaaacagtttttggtatgctgttaggagacaccatcattttggataatcta
gatgcagccaaccattatagaaaagaggttgttaaaatcacacactgtcccacattactg
actagagatggggatcgaattagaagtaatggaaagtttgggggccttcagaataaggct
cctccaatggacaaacttcggggaatggtcttcggagctccaataccaagacagtgtgtg
gtcttggggaaacaaatagacctccttcagcagtaccgcactgcagtatgcaagctgggc
actgtgaaccaggacttgagtaatcagttgcagtaccttcacacccctgacatgaagaag
aaaaagcaagagctggatgaacaggaaaaatccctgaagctaatagagcaaaaactcggt
atgactcccacacggaagtgtaatgactcagtttgtcacactgcaaagattgagttgaca
gagtgtccaattcctaccaaaaaaatgagaagagaatccaccagacaaaatagaagaccg
aaaggtgatgtgccaaactga
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