Prosthecochloris sp. CIB 2401: Ptc2401_00445
Help
Entry
Ptc2401_00445 CDS
T04424
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
proc
Prosthecochloris sp. CIB 2401
Pathway
proc03030
DNA replication
proc03410
Base excision repair
proc03420
Nucleotide excision repair
proc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
proc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ptc2401_00445 (ligA)
03410 Base excision repair
Ptc2401_00445 (ligA)
03420 Nucleotide excision repair
Ptc2401_00445 (ligA)
03430 Mismatch repair
Ptc2401_00445 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
proc03032
]
Ptc2401_00445 (ligA)
03400 DNA repair and recombination proteins [BR:
proc03400
]
Ptc2401_00445 (ligA)
Enzymes [BR:
proc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ptc2401_00445 (ligA)
DNA replication proteins [BR:
proc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ptc2401_00445 (ligA)
DNA repair and recombination proteins [BR:
proc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ptc2401_00445 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ptc2401_00445 (ligA)
MMR (mismatch excision repair)
DNA ligase
Ptc2401_00445 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ptc2401_00445 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
PTCB-BRCT
HHH
PGM1_C
BRCT_2
OrfB_Zn_ribbon
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
ANT64244
UniProt:
A0A1B1Q068
LinkDB
All DBs
Position
476586..478652
Genome browser
AA seq
688 aa
AA seq
DB search
MEVFVNQIKSLQSYVMHKEDAVIEVSRLREELNRHNYLYYVLARPEISDREFDRMMERLL
ALETEFPDLVTPDSPSVRVGGQITREFPVVRHTEPMLSLSNTYSGEEVEEFFRRVQRLLP
GEAAEEVKFVAELKFDGVAVSLLYRDGLLVRGATRGDGRRGDDITPNLRTVGTVPLRLSG
HGGEDGAFLEGEVEVRGEVFMRRDAFLRLNEGRPEEEQFANPRNATAGTLKLQDSREVAR
RSMMFVAYYLRGDAFEGLRHMERLGRLEDAGFFTGGQYRLCGGMEDIRAFIDEWADRRAE
LPYEIDGIVLKLDDSRYWQELGATSKSPRWAIAYKYPAEQAETVIRDVVFQVGRLGTITP
VAELVPVSLAGTTVSRSTLHNFDEIRRLDVRIGDHVVIEKSGEIIPKVIRVLDAKRADGS
RPIEVPHTCPSCGTRLERRDEEVNWYCPNEEGCKAQQRARILHFASRNAMDIKSLGKALV
EQLVARGLVTDSGDLYALTKEVLAGLDRMGERSAANLLDALDASKRQPYERVLFALGIRH
VGIATARELALAYPSIGTLSEAGSEELAAVADIGPVIAGSIREYFSSPRTTRLLEKLRDA
GLHFEAEAPAGLVNRNFEGMSVLFTGTLERHTRQQAAALVEERGGREVKSISRKTDLLVV
GRDAGGKLQKARKLDVKVVTEEDFEKML
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggaagttttcgtcaaccagataaagagtctgcagagttacgtgatgcataaagaggat
gcggtcatagaggtttcgaggctccgagaggagctgaaccggcataattacctttactat
gtgcttgcccggccggagatttccgaccgggaattcgaccggatgatggagcggctgctg
gcgcttgaaacggagtttccggaccttgtgacgccggacagccccagtgtgagggttggc
gggcagattacgcgcgagtttcccgtggtgcgccataccgagccgatgctcagcttatct
aatacctactccggggaagaggttgaggagtttttcaggagggtgcagcggctgttgcct
ggtgaggctgccgaagaggtgaagttcgtggctgagctgaagttcgacggtgtagcagtg
agcctgctctaccgggatgggcttcttgtgcgtggggctacccgtggagatggacgccgg
ggtgacgacataacgcccaacctccggacggtgggtacggtgccgctcaggctttctggg
catggtggtgaggatggggcattcctcgagggtgaggtcgaggtcaggggtgaagttttc
atgcgacgtgatgcttttctccggcttaacgaggggcgccccgaagaggagcagtttgcc
aatccccgtaatgcgacggcgggtacactgaagcttcaggattcacgggaggtggcacgg
aggagcatgatgtttgtggcctattacctcaggggggatgcattcgaggggcttcggcac
atggaacgacttgggcgccttgaagatgctgggtttttcactggaggtcagtacaggttg
tgcggtggaatggaggatatcagggcgtttatcgatgagtgggcagatcgccgggccgag
ttgccttacgagattgatggtattgtgttgaaactcgacgactcacgttactggcaggag
cttggggcaacgtcgaaaagcccgaggtgggccatagcctacaagtacccagccgaacag
gctgaaaccgtgatcagggacgtcgtgttccaggtggggcgcctcgggacaattactcct
gtggccgaacttgtgccggtaagccttgccggaacgacggtgtcacgttcgacgctgcac
aacttcgatgagatcaggcgtctcgatgtcaggattggtgaccatgtggtgatcgagaag
tcgggggagatcattcccaaggttatccgtgtgctggatgctaaaagagctgacgggagc
cggccgatagaggtgccgcatacctgtccgtcctgtggaacccgcctggagaggcgggat
gaggaggtgaactggtattgtcctaacgaggaggggtgcaaggcgcagcagcgggcgcgt
attcttcatttcgcttcgcgtaacgcgatggatatcaagagcctggggaaggcgctggtt
gaacagcttgttgcgagggggcttgtaacagattcgggagacctgtatgccttgacaaaa
gaagtacttgctggcctggatcggatgggcgaacgttctgccgccaaccttctcgatgcg
ctcgatgccagtaagcggcaaccttatgaacgggtgctgttcgcactggggatcaggcat
gtggggattgctacggcgagggaacttgctctggcgtacccttcgatcgggacgctttcg
gaggctgggagtgaggaacttgctgcggttgcagatatcggtccggtcattgcagggagc
atacgggagtatttctcttcccctcgcactacccgccttctggagaagctccgcgatgca
ggccttcatttcgaggctgaggctccggcagggctcgtgaaccgtaatttcgagggaatg
agcgtgctctttaccgggacgctggagcggcatacccgccagcaggctgcggcccttgtc
gaagaacgcgggggccgggaggtgaaatcaatcagcaggaagacagaccttcttgttgtt
ggcagggatgcgggcggcaagctgcagaaggcccggaaactggatgtgaaggtggtaacg
gaggaggattttgagaaaatgctctga
DBGET
integrated database retrieval system
