Prodigiosinella aquatilis: PCO85_18310
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Entry
PCO85_18310 CDS
T09220
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03030
DNA replication
prod03410
Base excision repair
prod03420
Nucleotide excision repair
prod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PCO85_18310 (ligA)
03410 Base excision repair
PCO85_18310 (ligA)
03420 Nucleotide excision repair
PCO85_18310 (ligA)
03430 Mismatch repair
PCO85_18310 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prod03032
]
PCO85_18310 (ligA)
03400 DNA repair and recombination proteins [BR:
prod03400
]
PCO85_18310 (ligA)
Enzymes [BR:
prod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PCO85_18310 (ligA)
DNA replication proteins [BR:
prod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PCO85_18310 (ligA)
DNA repair and recombination proteins [BR:
prod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PCO85_18310 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PCO85_18310 (ligA)
MMR (mismatch excision repair)
DNA ligase
PCO85_18310 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PCO85_18310 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WJV53118
LinkDB
All DBs
Position
complement(3927116..3929149)
Genome browser
AA seq
677 aa
AA seq
DB search
MNLLNSQSVESRINALRALLRHHEYLYHVEDAPEIPDAEYDRLMQELKGLELTHPELVTS
DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEQSYLAFNKRIGDRLKSDDELTFCCELK
LDGLAVSLLYEEGVLVGAATRGDGTTGENITTNIRTIGAIPLRLTGDNIPRRLEVRGEVF
MKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLSFFCYGVGLVEGGTL
PDSHWQRLMQFKAWGLPVSGHVTLCTGSDAVLAFYHRVEQERGSLGFDIDGVVIKVDDLV
LQARLGFVARAPRWAVAYKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVMVSN
ATLHNADEIERLGIQIGDRVIVRRAGDVIPQIVGVVMAERPQDSYPVVFPTHCPVCGSDV
ERVEGEAVTRCTAGLVCGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVKTPADLF
RLGAGMLTGLDRMGPKSAQNLVNALEKAKSTTLARFLYALGIRDVGETTAASLASHFGSL
ETLFNADIEMLQQVQDVGIVVATHVRHFLDEAHNQQVIRELIGSEIGIHWPAPVVIDANE
LDNPFAGKTIVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQ
ALAIPVIDEAEMIRLLG
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaacctattgaattcacagtctgttgagtctcgtattaacgcattacgcgccctgctg
cgtcatcacgaatacttgtatcacgtcgaagatgcgccggaaattcccgatgcggaatac
gatcggctgatgcaggagttgaaaggcctggaattgacgcatcctgaactggtgacgtcg
gattcgcctactcagcgggtaggtgctgcgccactggcggcatttgagcaagtacgccat
gaagtacccatgctgtcgctggataatgtatttgatgagcaaagctatctggccttcaac
aaacgtatcggcgatcgtctgaagagtgacgatgagctgacattttgctgcgaactgaaa
cttgatggtctggccgtcagcttgctgtatgaagagggtgtgctggtcggtgctgctact
cgtggtgacggtaccacgggtgagaatattactaccaatattcgtactattggtgcaatt
ccgctgcgactaacgggagataatattcctcgccgactggaagtgcgtggtgaagtgttt
atgaaacacaaagggttcgaggcgctgaatgaggaagcgcgtcgtaccggcggcaaagtg
tttgccaatccacgtaatgcggcggcaggttctctgcgtcaactggacccacgtattacg
gccaaacggccattgagctttttttgttacggtgttgggctggtggaggggggcacgtta
cccgatagtcattggcagcgtctgatgcagtttaaagcctgggggctgccagtcagtggg
cacgtcacgctatgcactggcagtgatgcggtactggcgttttatcaccgggttgagcag
gaacggggctcgctgggttttgacatcgatggtgtggtgatcaaggttgacgatctggtt
ttgcaggcgcggttggggtttgtcgcccgagccccacgctgggcggtcgcgtacaagttc
ccggcgcaagaacagcttacctggctgcgtgatgtggagtttcaggttggtagaaccggg
gcgatcacaccggtggctcgtctggagccggtggctgtggccggcgtgatggtcagtaat
gccacgttacataatgcggatgaaattgaacgccttggtatacagattggcgatcgggtg
attgtgcgccgcgcgggcgatgtgataccacagattgtgggtgtcgtcatggcggaacgg
ccgcaggatagctatccggtcgtgttcccgacacattgccctgtctgtggctccgatgtg
gaacgcgtcgaaggggaagcagtcacccgttgcacggcagggttggtgtgtggtgcacag
cgaaaagaatcactgaagcattttgtttcccgccgggcactggatgtagatggtatgggc
gataagatcattgatcaactggtagaaaaagaatacgtgaaaacgccggctgatctattc
cggcttggtgcgggtatgcttaccgggctggatcgtatggggccaaaatcagcacagaat
ctggtaaatgcgctggaaaaagccaagtccaccacgttggcccgttttctgtatgcgttg
ggtatccgggatgttggtgaaacgacggccgccagtctggcttcacatttcggttcgcta
gagacattattcaacgccgatattgaaatgttacagcaagttcaggacgtgggaattgtc
gttgccacacatgtgcgccatttcctggatgaggcacataatcagcaggttatccgcgaa
ctgatcggttctgagattgggattcactggcccgctcccgtggtaattgatgctaatgaa
ctagacaatccgttcgcgggtaaaactatcgtgttaactggttcactcagtattctgtcc
cgtgatgaggctaaagatcggttaacggcgttaggggcgaaagtcagcggcagtgtctcg
aaaaaaacggatttggtgatagctggagaggcggcaggttccaagctgactaaagcgcaa
gcgttggctattccggtgattgatgaagcagaaatgatacggttattagggtga
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