Pedobacter roseus: H9L23_02935
Help
Entry
H9L23_02935 CDS
T06980
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
proe
Pedobacter roseus
Pathway
proe03030
DNA replication
proe03410
Base excision repair
proe03420
Nucleotide excision repair
proe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L23_02935 (ligA)
03410 Base excision repair
H9L23_02935 (ligA)
03420 Nucleotide excision repair
H9L23_02935 (ligA)
03430 Mismatch repair
H9L23_02935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
proe03032
]
H9L23_02935 (ligA)
03400 DNA repair and recombination proteins [BR:
proe03400
]
H9L23_02935 (ligA)
Enzymes [BR:
proe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9L23_02935 (ligA)
DNA replication proteins [BR:
proe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9L23_02935 (ligA)
DNA repair and recombination proteins [BR:
proe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9L23_02935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9L23_02935 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9L23_02935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9L23_02935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
Nlig-Ia
HHH_3
RNA_ligase
Dna2
Motif
Other DBs
NCBI-ProteinID:
QNN43078
UniProt:
A0A7G9QIA3
LinkDB
All DBs
Position
complement(664496..666508)
Genome browser
AA seq
670 aa
AA seq
DB search
MPQIAIKEEMDTLVAELNQHNYNYYVLAMPTIGDYEFDKKLKHLAELEKANPDFADPNSP
TQRVGGDITKNFITVNHKYPMLSLGNTYNEQDLRDFDERIRKAIGDNFEYVCELKFDGLS
ISLTYENGKLLRAVTRGDGTKGDDVTNNVKTIHTIPHQIKSSVAPEHFEIRGEIFMHKAA
FLRLNAAREELGEIPYANPRNFASGTIKMQDSKEVAKRPLDGFIYFLYTDKNEFKTHWES
LNAVKEWGFHVCEHNRLVSNIDAVLEFIHHWENERFKLSYDIDGIVIKVNNYSQQQELGF
TSKSPRWAISYKYKAAEVETVLEKVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EIDRLDLHEGDTVYVEKGGEIIPKIIKVNLDKRFAGAAKVHYLHNCPECGTELIRKEGEA
VHYCPNDEGCPPQIVGKIQHFISRKAMNIDGLGDETIETFYKHGLVNHISDLYTLYQKSD
QLKTLDRFGERSIENMLAGIEKSKEMPFEKVLFGLGIRYVGETVARKTAAGVMNIDNLAK
ATVEELISIDEIGQRIAESIVEYFGKEEHLKQVELLKLAGLQFEIEEKVITLDSDRLIGK
TFVISGVFENYSRDELKDLIEANGGKMLSGISGKLNYLVAGDNMGPSKLEKANKLNVPMI
SDAELLEMIK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgccccaaattgcaataaaagaagaaatggacacccttgtggccgaattaaaccagcac
aattataattattacgtgctggctatgcccactattggcgattatgagtttgataaaaaa
ttaaaacatttagccgagctggagaaagcaaaccctgattttgcagatcccaattcgcct
acccagcgtgtaggtggcgatatcaccaaaaacttcatcaccgtaaaccataaatacccc
atgttatccttggggaatacctataatgagcaagatctccgtgactttgacgaacgtatc
cgtaaagctattggtgataattttgaatatgtatgtgagcttaaatttgatggtttatcc
attagcctgacctacgaaaacggtaaacttttgcgtgcggttacccgtggcgatggtacc
aaaggcgatgatgtaaccaataatgtaaaaaccatccataccattccccaccagattaaa
tcgagcgttgcgcctgaacatttcgaaattcgtggagagatttttatgcataaggcggct
ttcttacgtttaaatgctgccagagaagaattgggtgaaattccttacgcaaatccgcgg
aactttgcctctggaaccattaaaatgcaggatagtaaggaagtggctaaacgaccttta
gacggcttcatctatttcctttatacagataaaaatgaattcaaaacccattgggaaagt
ttaaatgcagtaaaagagtggggtttccacgtttgcgaacacaacagactggtttccaat
atagatgccgttttggaatttatccaccattgggaaaatgagcgttttaagctcagttac
gatattgatggtattgttattaaagttaacaattactcgcagcagcaagagcttggtttt
acctctaaatcacctcgttgggcaatctcttataaatataaagctgcagaggttgaaact
gttttggaaaaagttacctaccaggttggcagaacgggtgctgttacccctgtagccaat
ttaaaacctgttttacttgccggaacgaccgttaaacgtgccactttacataatgccaac
gaaattgaccgtttagatttacacgaaggggataccgtttatgtagaaaaaggaggcgaa
attatccccaaaatcatcaaggtaaatttagataaacgtttcgcaggggcagcaaaagta
cattacctgcataactgccctgaatgtggaacggaactgatcagaaaagaaggtgaagcg
gtacactactgtccaaacgatgagggctgtccaccgcagattgttgggaaaatacagcac
tttatttctcgcaaagcgatgaatattgatggacttggcgacgaaaccatcgaaacattt
tacaagcacggtttggtaaaccatatcagcgatttatatacgctatatcaaaaatcagat
cagcttaaaacattagaccgtttcggagaacgttcaattgaaaatatgcttgccgggatt
gaaaagtcgaaagaaatgccttttgagaaagtgctttttggtttgggaatccgctacgtt
ggcgaaactgtcgccagaaaaacagccgccggagtaatgaatatcgacaatcttgctaaa
gctaccgtagaagaattgatttcaattgatgaaatcggacagcgcattgcagagagcatt
gttgagtattttggaaaagaagagcacttaaagcaggtggaattattaaaattagcagga
ttacagttcgaaattgaagaaaaggtaattacgcttgatagtgacagacttattggaaaa
acattcgtaatttcgggcgtttttgagaactatagccgcgatgagctaaaagacttgatt
gaggccaatggaggcaagatgctgagcggtatatcgggtaaattaaattacctggtggcg
ggcgataacatggggccttcaaaactggaaaaagcgaataaactaaacgtcccgatgatc
agcgatgctgagctattggaaatgataaaataa
DBGET
integrated database retrieval system
