Proteiniphilum propionicum: KDN43_01890
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Entry
KDN43_01890 CDS
T08430
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
proj
Proteiniphilum propionicum
Pathway
proj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
proj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KDN43_01890 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
proj03400
]
KDN43_01890 (mfd)
Enzymes [BR:
proj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KDN43_01890 (mfd)
DNA repair and recombination proteins [BR:
proj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KDN43_01890 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
VWD
Ribul_P_3_epim
Motif
Other DBs
NCBI-ProteinID:
ULB34834
LinkDB
All DBs
Position
complement(503272..506616)
Genome browser
AA seq
1114 aa
AA seq
DB search
MVETIKIDKLQLRVEKHPNVAAADSLLKNVNILSVKGLQGSSRAIFAVGMYRKHPRTYLY
ILNDAETAGYFYHDVLQLIGPGDVMFFPSAYKRAAKYGQPDAANEVLRTELLCRLQGESS
PLIIVSFPDALAEKTVSAVLLRENTLNVSVGERIDSSFVSEMLDSYGFQYTDYVYEPGQY
ALRGSILDVFSFSSEFPYRIDFFGDEVETIRNFDPETQLSNEKFNHIRIVPEFVNSDSGK
ASLFDYLPATSVIGIEDIRWISSRVESLNDDLLHIDVRDVEFVKADMLSKNDFIKGLKQF
KQLRFDVKMADTPDASIDFKTSLQPLYHKNFDLVSSSFHQFIDDGYTIYVLSDSEKQQKR
LYHIFEDRDDPIPFIPVNKTLHEGFSDETLKICCFTDHQIFDRFHKYSLKSDRVRSGKLT
LTLKEINQLQQGDYVVHMDHGVGRFAGLVRLRIGDKVQEVIKLTYLNNDAVFVSIHSLHK
ISKYKGKEGEQPQLNKLGSGAWERVKERTKSKIKDIARDLIRLYAKRLQEKGFAYSRDTY
MQTELEASFMYEDTPDQIKATRDVKADMQSERPMDRLICGDVGFGKTEIAIRAAFKAAVD
GKQTALLVPTTVLATQHYHTFSERLANFPVKVDYLSRARSSKEQKSILSDLKDGKIDIII
GTHRLVGKDVQFKDLGLLIIDEEQKFGVSTKEKLKQMKVNIDTLTMTATPIPRTLQFSLM
GSRDLSTIGTPPPNRYPVQTEVHTFDMEIIRDAVNFEMSRNGQVFIVNNRIKNIYEIEAL
IKREIKGVSIAVGHGQMDPKKLEEVIADFINQEHDVLIATTIIESGIDMPNVNTIIVMDA
HNFGLSDLHQLRGRVGRSNRKAFCYLLAPPLYTLSSESRRRLQAIENFAELGSGIHIAMQ
DLDIRGAGNLLGAEQSGFIADLGYETYQKILSEAVHELRKDEFSELYKEQQEIKASDLNF
VDEVLVESDLELMFPATYIPNDSERVAIYRELDSMETETEILNFTGRIEDRFGKIPQQGK
ELIRIVRLRRIAKSLGLEKIVLKNGQMTLFLISDPESPYYSSSIFDNLLNYVQLHPRQCR
LRENGKKRSVMISNVETVENGVAILEDMLKTAPL
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaacaataaaaattgataaactacagctaagggttgaaaaacatcctaatgtg
gcggcggcggattcattactgaaaaatgttaacattttatcggtaaagggtttgcagggg
tcgtcacgggccatctttgccgtgggaatgtacaggaaacatccgcgaacgtacctgtat
attctgaatgacgcggaaacagcaggttatttctatcacgatgttttacagcttatcggg
cctggtgatgtgatgttctttccctctgcatataagagggctgcaaaatacggacagcct
gatgcggcaaacgaggtactgcgaacagagttattgtgccggctgcagggagaaagcagc
ccgttgattattgtaagctttcccgatgcgctggcggaaaaaaccgtttcagcagtgcta
ctcagggagaatacacttaatgtgtcggtgggtgaaaggattgattcgtcattcgtgagt
gagatgttagacagttacgggtttcaatatactgattatgtgtatgaaccgggacagtat
gcccttaggggtagcattctcgatgtattctcgttctcaagtgagttcccttaccgtatt
gatttttttggagatgaggtggaaaccatcagaaatttcgatccggagacccaactctct
aatgagaaattcaaccatatacgcatcgttccggaatttgtgaattctgattccggaaag
gcatcgctgttcgactacctcccggcaacctcggttatagggatagaagatattcgctgg
atatcaagccgtgtggagtcgctaaatgatgatttactgcatattgatgtcagagatgtg
gagtttgtaaaggcagacatgttatcgaaaaatgattttattaagggcttaaaacaattc
aaacaacttcgtttcgatgttaagatggcagatacacccgatgcatccatcgatttcaag
acttctttgcaaccgctctatcacaaaaacttcgatttggtgagcagctcttttcatcag
ttcattgatgatggctatacaatatatgtactaagcgatagcgaaaagcaacagaaacgt
ctttaccacatttttgaagatcgcgacgaccccatcccgtttattccggtgaataaaact
ttgcatgaaggtttttcggatgagacactgaaaatctgctgttttaccgatcatcagatt
ttcgaccgttttcacaaatatagcctgaaatccgacagagtacgctcaggcaagctgaca
cttacactaaaagagataaatcagcttcaacagggcgattatgtggtgcatatggatcac
ggtgttggcaggtttgcgggtctggtgaggcttcgtataggagataaggtgcaggaggtg
attaaacttacttatctgaataacgatgcggtgtttgtatcaattcactcgctgcataag
atttctaaatataagggaaaggagggtgaacagccgcaactgaacaaactgggctccggc
gcatgggaaagggtgaaagagcgtacaaaatcgaagatcaaggatattgcacgcgacctg
attaggttatacgccaaacgactgcaggagaagggctttgcttactcaagggacacatat
atgcagactgaactggaggcttcgttcatgtatgaagatacgcccgaccagataaaagct
acacgcgatgtaaaggctgatatgcaaagcgagcgtcccatggatcggcttatttgtgga
gatgtgggcttcggcaaaacagagatcgctattcgtgccgctttcaaggctgcagttgat
ggcaagcagactgctttactggtgccgaccactgtattggctacacagcattatcatacg
ttcagtgagaggctggcgaatttcccggttaaagtggattatttgagccgtgcgagatcg
tcaaaagagcaaaagtcgatcctcagcgatctgaaagatggtaaaatagatatcatcata
ggtactcacagactggttggaaaggatgtgcaattcaaggacctgggattgcttatcatc
gatgaggaacagaaattcggtgtctcaaccaaagagaagttgaaacagatgaaggtgaat
atagatacactcactatgactgctacgcccattccaaggactttacagttttcacttatg
gggtcgcgtgacctttcaaccataggaacgcctccgccaaaccgttatccggtgcagacc
gaagttcatacattcgatatggaaattattcgcgatgcagtgaattttgaaatgagccgg
aacggacaagtgtttatcgtgaataaccgtatcaagaatatttacgagatagaggctctt
ataaaacgggagattaagggagtaagtatagctgtgggacatgggcagatggatccgaaa
aaattggaggaggtaattgccgactttataaaccaggagcatgatgtgcttattgccacg
accataatagagtcgggaattgatatgcccaatgtgaataccattattgtgatggatgca
cataatttcgggttgagcgacctgcatcagttgaggggaagagtggggcgaagtaaccgt
aaggcgttctgctacctgcttgccccacctctttacacgttgagcagtgagtcgcgacga
agattgcaggcgatagagaactttgcagagctgggtagcggtattcatattgccatgcag
gatctggatatcaggggggcaggcaacttgctgggagcggaacagagtgggtttatagcc
gacctgggctatgaaacttatcagaaaatcctttccgaagctgtacacgagcttcggaaa
gatgagttttcggaactctataaggaacagcaggagataaaagcatcggatctgaacttc
gttgatgaagtgcttgtggaaagcgaccttgagctgatgtttccggctacatatatacca
aacgactcggagagggtggctatataccgtgagcttgacagtatggagacagaaacggaa
atacttaattttaccgggcggatagaggacagatttggaaaaataccgcaacagggtaaa
gagctgattagaatagtgaggcttcgtcgtattgcgaaatcgctgggattggaaaagatt
gtactgaaaaacgggcaaatgactctcttcctgatctcagatccggaatctccatattac
agctcatcaatatttgataatttattaaattatgtgcagctccatccgcggcaatgccgg
ctgcgggagaatggaaaaaaacggtctgtaatgatcagtaacgtggaaacagtggagaat
ggagtagctattcttgaggatatgctcaaaacagcccctctatag
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