Proteiniphilum propionicum: KDN43_04680
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Entry
KDN43_04680 CDS
T08430
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
proj
Proteiniphilum propionicum
Pathway
proj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
proj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDN43_04680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
proj03019
]
KDN43_04680
03400 DNA repair and recombination proteins [BR:
proj03400
]
KDN43_04680
Enzymes [BR:
proj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KDN43_04680
Messenger RNA biogenesis [BR:
proj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDN43_04680
DNA repair and recombination proteins [BR:
proj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KDN43_04680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HTH_IclR
ResIII
zf-CXXC
TrmB
HTH_9
HTH_46
Motif
Other DBs
NCBI-ProteinID:
ULB35338
LinkDB
All DBs
Position
1211143..1213065
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AA seq
640 aa
AA seq
DB search
MQSDLFHNILYEFWGYSSFRPLQEEIIQSVWEGRDTLGLMPTGGGKSLTFQVPVMAMKGI
CLVVTPLISLMKDQVDNLRERGIKAAAVYSGMSRDEIITTLENCIFGDFKFLYVSPERLS
SDIFIAKLQAMDVCLLVVDESHCISQWGYDFRPSYLKIAGIRGLLEGIPVLALTATATKE
VVEDIQDKLLFREKRVFRKSFARDNLSYVVRTADNKVGELIHILQSVPGAGIVYVRSRRQ
TKEIAQYLRNEGISANFFHAGLPNEEKIGRQNAWMQDSCRVMVATNAFGMGIDKPDVRTV
VHMDLPSSPEEYFQEAGRAGRDGERSYSIILYTKADSDKLRKRISDSFPGRDFIVRVYDA
LGNYYQVAVGAGYNSVYDFSLHEFCMPYKLPFLPTHHALKILELAGYIEYTEEIDMRSRI
RILIYRDEMYSLHLDKRSEEVLHCILRSYTGVFSDDVYIDESMLASRTGMSRAEVYDILT
SLSRLRYVRYVPQKKTPFIVFTTSREDPKFVTIPKAVYEERRKRFEKRIYSMIEYAEEED
VCRSRMLLAYFSEANPQDCGHCDVCLRKTETGLTNYQFRVIAGQLKSTLQSDGPIRFNHL
VDSVPEESRDDVILVLRYLIDENEFLLKDDEVSIKNTHLD
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcagatttgtttcacaatattctttatgagttctggggatattcttcatttcgt
cccttgcaggaagagattatacagtctgtatgggagggaagggacacccttggattgatg
cctactggcggcggaaagtcgctgacctttcaggtgccggtgatggcaatgaaaggtata
tgccttgttgtaacccctctcatatcgctcatgaaagatcaggtggacaaccttcgcgaa
agaggtattaaggctgcagccgtatattccggcatgtcacgtgacgaaataataaccaca
cttgaaaactgcattttcggagattttaagtttctgtacgtctcccctgaacgtctttcc
tccgacatattcattgccaagctgcaggccatggatgtgtgcctgttggtggtagatgag
tcgcattgtatttcacaatgggggtatgattttcgcccctcttaccttaagattgccgga
atacgcggtttgctggaggggatacctgtgcttgctctcacagctacagccaccaaagag
gttgttgaggatatacaggataagctcctttttagggagaagagggtttttcgaaagagt
tttgcacgcgataacttgtcatatgttgtgaggacagcagataataaggtaggggagctg
atacatattctgcagtcggtgcccggggcaggtattgtatacgtaaggagccgcaggcag
acgaaagagatagcacagtatcttcgtaatgagggtatctccgccaattttttccatgcc
gggcttccgaatgaggagaaaattgggaggcagaatgcctggatgcaggacagctgccgg
gtgatggtggcaacaaatgcatttggaatgggtattgacaagcccgacgtacgtacagtt
gttcatatggatctgcccagctcaccggaagaatattttcaggaagctggccgtgccggt
cgagacggagagcgctcctattccattattctctatacaaaagctgatagtgacaagctt
aggaagaggatttcggactcattccccggcagggacttcatagtaagggtttacgatgct
cttggaaattactatcaagtggccgtgggagccggatataacagtgtatatgattttagc
ctccatgagttctgtatgccttacaagcttccattcctgcccactcaccatgccctcaaa
atattggagctggccggatacatagaatatacggaagagatagatatgcgttcaagaatt
cgaattcttatttatcgtgacgagatgtattctctacatctggacaaaaggtcagaggag
gttcttcactgtatcctcaggagttataccggtgtcttttcagatgatgtctatattgac
gaatctatgctggcatcaaggacaggtatgagccgtgcggaggtatatgatatactcacc
tctctgtcgcggctacgatacgtaaggtatgtaccgcagaaaaaaacgcctttcattgtt
tttacaacctctcgtgaggatcctaagtttgtaaccattcccaaagcagtttatgaagag
aggagaaagcgttttgagaaaaggatatactctatgatagagtacgctgaggaggaagat
gtttgccgcagcagaatgttgctggcctatttcagcgaggcaaatcctcaagattgcggc
cattgcgatgtatgtttgaggaaaaccgaaacaggcttaacaaactaccagtttcgtgtg
attgccggacaactgaaaagtacattgcagtcagacggaccgataaggtttaatcacctg
gtcgattcggttccggaagagagtcgtgatgatgttattcttgtacttaggtatttgatt
gatgagaatgagtttttgctgaaagatgatgaggtgtcaataaaaaacactcacctggat
tga
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