Proteiniborus sp. MB09-C3: QO263_17650
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Entry
QO263_17650 CDS
T09105
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prom
Proteiniborus sp. MB09-C3
Pathway
prom03030
DNA replication
prom03410
Base excision repair
prom03420
Nucleotide excision repair
prom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QO263_17650 (ligA)
03410 Base excision repair
QO263_17650 (ligA)
03420 Nucleotide excision repair
QO263_17650 (ligA)
03430 Mismatch repair
QO263_17650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prom03032
]
QO263_17650 (ligA)
03400 DNA repair and recombination proteins [BR:
prom03400
]
QO263_17650 (ligA)
Enzymes [BR:
prom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QO263_17650 (ligA)
DNA replication proteins [BR:
prom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QO263_17650 (ligA)
DNA repair and recombination proteins [BR:
prom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QO263_17650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QO263_17650 (ligA)
MMR (mismatch excision repair)
DNA ligase
QO263_17650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QO263_17650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
5_3_exonuc
HHH
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
DPOA2_OB
IFT52_GIFT
Ead_Ea22
Motif
Other DBs
NCBI-ProteinID:
WIV11897
LinkDB
All DBs
Position
complement(3590849..3592840)
Genome browser
AA seq
663 aa
AA seq
DB search
MNKQDRIKELVDILNQLSYYYYTLDSPKVSDKEYDALYDELLRLESETGIILSDSPTQRV
GGAPLEKFEKHRHLRSLWSLDKGQSFGELRSWDQRARKLIEQYNSEHDEKLPEPTYDMEL
KFDGLTINLTYVDGNLVQGATRGNGTIGEAILPQLKTIKSIPLSIKHKGTIEVQGEGLMP
LSALEKYNETAAEPLKNARNAAAGALRNLDPKVTAERNLTAYFYNIGYSEGLRFNTHVEM
IEFLKENRFPVNEYFKSFNNIEEVIEEIERVKEDRKGLDILTDGLVIKINDMRTREALGY
TQKFPRWAIAYKFEAEEVTTKLLGIEWNVGRTGKVTPTALLEPIDIGGVTVKRATLNNWD
DIQRKKVAIGCRVWIRRSNDVIPEIMGTVEDSCQEAELIPKPEKCPACDSELVQEGVHIF
CPNSLSCKPQLVSRLVHYASRDAMNIEGFSEKTASQLFEEIHLKDIPGLYELKLEDIINL
ERFGPKKAQNLLDAIEKSKECKLDSFVYALGIPNVGKKTATDLADEFQSLEKLMEAKHEE
LIKVPDIGDIVANSVIEFFHDEKIVNSIDKLLSEGIKIRYEHEKIEEETIFTGKTVVITG
TIEGYSRSQSEEKVKKMGGKASGSVSKKTDYVIVGEEAGSKADKAKELGVKIITGEEFLN
IVK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaacaggatagaataaaggaactagtagatatactaaatcagcttagttactat
tactatacattagatagtccaaaggtcagcgataaggagtacgatgcactttatgatgag
ctgttgagacttgaaagtgaaactggcattatattgtcagattcacctactcaaagagta
ggtggagcacctctagaaaaattcgaaaagcatagacatctaagaagtttgtggagttta
gataaggggcaaagctttggagagcttagaagctgggatcaaagagcaagaaagctaatt
gagcagtataattcagaacatgatgaaaaattgccagagccaacttatgacatggagtta
aaatttgatggattaacaattaatttgacttatgtagatggaaatctagtccaaggtgct
actagaggaaatggaactataggagaggctatattgccacagctaaaaactataaaatct
ataccacttagtataaagcataaaggcactatagaggtgcaaggggaagggttaatgcca
ctttctgctcttgaaaaatacaatgaaacagcagcagaacctcttaagaatgcaagaaat
gctgctgcaggtgctttaagaaaccttgatccaaaggttactgcagagagaaatctaaca
gcttatttttacaatataggttattctgaagggcttaggtttaacactcatgtcgaaatg
atagaatttttgaaggaaaataggtttccagtaaatgaatactttaaatcatttaacaac
atagaagaagtaatagaagaaattgagagagtgaaagaagatagaaaaggtttagacata
cttactgatggactagtaataaaaataaacgacatgagaactagagaagctctaggatat
acgcagaagtttcctaggtgggctattgcatacaaatttgaggcagaggaagtaactacg
aagcttttaggtatagagtggaatgtgggaaggactggaaaggttactccaacagcgctc
ctggagcctattgatattggaggagtcacagtaaaaagggcaaccctcaataactgggat
gatatacagagaaaaaaggtagccataggctgcagagtgtggataagaaggtcgaatgat
gtaataccagagataatgggaaccgtagaggatagctgtcaggaagcagaattaatacca
aagcctgaaaaatgtccagcctgcgatagtgagcttgtgcaagaaggagtacatatattt
tgtcccaattctctatcctgtaagcctcagcttgtatctagattagtccattatgccagc
agggatgctatgaacatagaaggatttagtgaaaagactgcctctcagcttttcgaagag
attcacttaaaggatatacctgggttatatgagcttaagctcgaagatataataaatctg
gagaggtttggacctaaaaaagcgcaaaatcttctggatgctattgaaaagagcaaagaa
tgtaaattagattcatttgtatatgcattgggaatacctaatgtaggtaaaaaaactgcc
actgacctagctgatgaatttcaatccttagaaaagttaatggaagcaaagcatgaggaa
cttataaaagtacctgatattggagatatagtggctaatagcgtaattgaattttttcat
gatgaaaaaatagtgaatagtattgacaaattattatcagaaggaattaagattagatat
gaacacgagaaaatagaagaagaaaccatatttactggtaaaacagttgtaataactggt
accatcgaggggtatagcagaagccaatctgaggaaaaggtcaaaaaaatgggtgggaaa
gcctcaggaagtgtaagcaaaaaaacagattatgtaattgttggggaagaagctggttcc
aaggcagataaagctaaagagctaggagtaaagataattactggtgaagagtttttaaat
atagtaaaataa
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