Propionimicrobium sp. PCR01-08-3: QQ658_03730
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Entry
QQ658_03730 CDS
T09133
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prop
Propionimicrobium sp. PCR01-08-3
Pathway
prop03030
DNA replication
prop03410
Base excision repair
prop03420
Nucleotide excision repair
prop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QQ658_03730 (ligA)
03410 Base excision repair
QQ658_03730 (ligA)
03420 Nucleotide excision repair
QQ658_03730 (ligA)
03430 Mismatch repair
QQ658_03730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prop03032
]
QQ658_03730 (ligA)
03400 DNA repair and recombination proteins [BR:
prop03400
]
QQ658_03730 (ligA)
Enzymes [BR:
prop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QQ658_03730 (ligA)
DNA replication proteins [BR:
prop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QQ658_03730 (ligA)
DNA repair and recombination proteins [BR:
prop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QQ658_03730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QQ658_03730 (ligA)
MMR (mismatch excision repair)
DNA ligase
QQ658_03730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QQ658_03730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WIY83477
UniProt:
A0A9Y2RV16
LinkDB
All DBs
Position
790005..792170
Genome browser
AA seq
721 aa
AA seq
DB search
MSSEDDQIAAEELQPEETPELAEAGLDEQHRWSELADQINDAQEAYYGLDSPTMSDAEYD
GLMRELEELEKQFPQLRTPDSPTQRVGSAHRVTDFAPVTHVQRLLSLDDVFSIDELTDWL
ARTDRLLGGRKPSWLCELKIDGLAVDLVYRGGRLVSGATRGDGRVGEDITPNVWTIAGIP
HTLPGSGHPELLEVRGEIFFPIEGFADLNASLVEAGKPPFANPRNAAAGSLRQKNPAVTA
SRPLRMLVHGIGAHEGLALERQSQAYEVLTDWGFPTSQAYQVVGSTREVLDYVAYHGEHR
HDLLHEIDGIVVKVDDLDQQEDLGTTSRAPRWAIAFKYPPEEVNTKLLDIQVNVGRTGRV
TPFAVMEPVKVAGSTVARATLHNAWEVKRKGVLIGDTVVLRKAGDVIPEVLGPVVDLRDG
SEREFEMPTHCPVCGTKLRPERESDKDIRCPNSKSCPAQLTERLFSLASRHGFDIEALGW
EGARGLLASGVLTNEAGLFDLDADQLMRVPLYTRTAKKSDPPEQVVDGRVLSAGGHKLLA
NLETAKQQPLWRVLVGLSIRHVGPTAARALAERFGSMDAIRSASVDDLATTEGVGQIIAE
AVVEWFTEPWHREVVERWAASGVRMADEQPSDEKSLPQTLEGLSVVVTGSLTGFTRDSAK
EAIIERGGKAASSVSKKTDYVVVGDSPGSKATKAEDLKLPILDEDGFVRLLESGPAGLGK
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgaagacgatcagatcgctgctgaagagctgcaaccggaggaaaccccggag
cttgccgaggccgggctggacgagcagcatcgctggagcgaactcgccgaccagatcaac
gacgcccaggaggcgtactacggtctggattcgcccaccatgtcggacgccgaatacgac
ggcttgatgcgcgagctggaggagctggagaagcagttcccgcagttgcgaacccccgat
tcgcccacccagcgcgtcggatccgcgcaccgggtgaccgatttcgccccggtgacccac
gtgcagcgcctgctgagtttggacgacgtcttcagcattgatgaattgaccgattggtta
gcccggacggatcggctcctgggcggacgtaagccgagctggttgtgcgaactcaagatt
gatgggctggcggtcgatctggtgtatcgaggcgggcggctcgtctccggtgcgaccagg
ggtgatggccgggtcggtgaagacatcacgccgaacgtgtggacgatcgccgggatcccg
cacactctgccgggatcgggtcatccggagttgctcgaggtccgtggggagatctttttc
ccgattgagggcttcgctgacctgaatgcctcgctggtcgaggcaggcaagcctcccttc
gcgaatccccgcaatgccgctgccggatcgctgcggcagaagaatcctgcggtgactgcg
tctcgtccgttgcggatgctcgtgcacggaatcggtgcccatgaggggttggcgctggag
cggcagtcacaggcatatgaggtgctgaccgactggggattcccgacctcgcaggcctac
caggtcgttggttcgacgcgggaggtgctggattatgttgcctatcacggcgagcaccgg
cacgatctgctgcacgagatcgacggcatcgtcgtgaaggtggacgatctcgatcagcag
gaagatctgggcactacatcgcgggcgccccggtgggcgatcgcctttaaatatccgccc
gaagaagtcaataccaaactgctcgatattcaggtcaatgtcgggcgaaccggacgagtg
acgccgttcgccgtgatggagccggtcaaagttgccggttccacggtcgcgcgcgccacg
ttgcacaacgcgtgggaggtgaagcgcaaaggcgtgctgatcggagacaccgttgtgctg
cgcaaggcgggcgatgtcattccggaagtgctcggcccggtggtcgacctgcgagacggc
agcgagcgagaattcgagatgccgacgcattgcccggtatgcgggaccaagctgcgtccg
gagagggaatccgacaaggacattcgctgcccgaactcgaagtcatgcccggcgcagttg
accgagcggctgttcagccttgcgtcgcggcacgggtttgacattgaggcgctcggctgg
gagggtgcgcgtggcctgctggccagcggggtgctgaccaacgaggctggcttgttcgat
ctggatgcggaccaactgatgcgggtgccgttgtacacacgcacggccaagaagtccgac
ccgcctgagcaggtcgtcgatggacgggtgctttcggcgggcggacacaaactgttggcg
aacctggagacggcgaagcagcaaccgctgtggcgagtgctggtggggttgtcgattcgt
catgtggggccgacggcggcgcgggcactggcagagcggttcgggtcgatggacgcgatt
cgttcggcttctgttgatgacctggctaccaccgaaggggtcggccagatcatcgcggag
gcggtcgtggaatggttcaccgagccctggcatcgggaggtggtggagcgttgggccgcg
tccggagtaaggatggccgacgaacagccttcggatgaaaagtcattgccacagactttg
gagggattgtcggttgtggtgacgggctcgttgaccgggttcacccgggattcggcgaaa
gaagccattatcgagcgcggcgggaaggccgcgtcctcggtttcgaagaagaccgattat
gtggtggtgggggacagccccggatccaaggcgacgaaggccgaggatctgaagctgccg
atcttggacgaggacggcttcgtccggctgctggagtcggggccagccggcctgggcaag
gcgtga
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