Prosthecochloris sp. SCSIO W1101: OO006_11660
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Entry
OO006_11660 CDS
T09696
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prow
Prosthecochloris sp. SCSIO W1101
Pathway
prow03030
DNA replication
prow03410
Base excision repair
prow03420
Nucleotide excision repair
prow03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OO006_11660 (ligA)
03410 Base excision repair
OO006_11660 (ligA)
03420 Nucleotide excision repair
OO006_11660 (ligA)
03430 Mismatch repair
OO006_11660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prow03032
]
OO006_11660 (ligA)
03400 DNA repair and recombination proteins [BR:
prow03400
]
OO006_11660 (ligA)
Enzymes [BR:
prow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OO006_11660 (ligA)
DNA replication proteins [BR:
prow03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OO006_11660 (ligA)
DNA repair and recombination proteins [BR:
prow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OO006_11660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OO006_11660 (ligA)
MMR (mismatch excision repair)
DNA ligase
OO006_11660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OO006_11660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Zn_ribbon_FGT1_2
HVO_2753_ZBP
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
UZJ40998
LinkDB
All DBs
Position
complement(2519213..2521303)
Genome browser
AA seq
696 aa
AA seq
DB search
MHKESAVAEAERLRKELDRHNYLYYVLAKPEISDYEFDKMLEKLIALEKEFPDLKTSDSP
TLRVGGWITKEFPTVRHRERMLSLSNTYSVEEVGDFYKRVLRLLPDSSAHRNGPAFVAEL
KFDGVAVSLIYRDGKLMQAATRGDGVQGDDITPNIRTLRSVPLHLGSFTGGALTSAESDA
EIEVRGEVFMRKEDFKALNETRQEDEQFANPRNATAGTLKLQDSAEVSRRKLFFVGYYLQ
GVPFDDLTHHERLKKLEKLGFYTGKHYRLCYNLEDIHKFIDGWYDQRWGLPYEIDGVVLK
LNEVFLWEELGATSKSPRWAIAYKYPAQRARTVLKDVVFQVGRLGTVTPVAHLEPVRLAG
TTVSRSTLHNLDEIERLDVRLNDTVEIEKAGEIIPKVISVVKEERPENARIIAVPEVCPS
CGAVLERPADEVNFYCPNEVTCPAQVKARLEHFASRNAMDINGLGKAIVEQLVDSKLVYD
PGDLYSLTLENVLKLERQGEKSAAKLLNAIEKSKKQGYDRLLFALGIRHVGLATARELSA
SYPSLEKLQATTVEELASVPDIGPVIAESVLAFFKKPYAQAMIEKFRAADVKLTADASTT
LVSRSFDGMKVIFTGGLERYTRNEASELVLERGGKIVSSVSKNTDLVVAGKEPGSKLEKA
RKLGVNVVSEQEFEEMLEQNEYEIREGRVDAASNSA
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaggaaagcgcggttgcagaagcggaacgtttgcgtaaagagctcgaccgtcat
aactatctctactatgtacttgccaaaccggagatttcggattatgaattcgacaagatg
cttgagaagcttattgcgcttgaaaaagagtttccggatctgaaaacttccgatagcccc
accctgagggtaggagggtggattaccaaagaatttcccactgtcaggcaccgtgagcgt
atgctcagtctttccaatacctattcggtagaggaagttggtgatttttacaaaagagta
ctcaggcttttgcccgacagttcagcgcatcgaaatggacctgcatttgtcgctgaactg
aagttcgatggtgttgcggtcagtctgatatatcgtgatggcaaactgatgcaggccgca
acgaggggtgatggggttcaaggtgatgatatcacaccgaacatcaggacgcttcgctcg
gtgcctctccacctcggttcgtttaccggaggagcgctgacttccgccgaaagcgatgca
gagatagaggttcgaggggaagtgtttatgcgcaaggaagattttaaggctctcaacgaa
actcgacaggaggacgagcagtttgccaatccaagaaatgccacagccggaacactcaag
ctacaggattcggctgaagtttctcgtagaaagctgttttttgtaggctattatctgcaa
ggggttccttttgacgatctgacgcatcatgaacggctgaaaaagctggagaagctgggt
ttttataccggtaagcactatcggttatgctacaatctcgaagatatccacaagttcatt
gacggttggtatgaccaacgctggggtcttccttacgagatagacggtgtcgtgctcaaa
ctcaacgaagtttttctctgggaagaactgggggcgacatcgaagagcccgagatgggct
atagcctataaatatcctgctcagagagccagaaccgttcttaaagatgttgtgttccag
gtcggcaggcttgggaccgtcactccggtagcccaccttgagccggtgaggcttgctgga
acaaccgtttcccgttcgacgttgcacaacctcgatgaaatagagcgtcttgatgtgcgg
ctgaacgacacggtggagattgaaaaggctggtgaaataatacctaaggtgatcagcgtc
gtcaaggaagagcgcccggaaaacgccaggattatagctgttccggaggtttgtccttcc
tgtggtgcggtccttgaaagaccggctgacgaagtgaacttctactgcccgaacgaggta
acatgtccggcacaggttaaagcacgtctggagcattttgcttcgcgcaacgcaatggat
atcaatggtctgggtaaggcgatcgtagagcagcttgtcgacagcaaactggtctatgat
ccaggggatctttacagtctgacacttgaaaatgtgctgaaactcgagcgtcagggtgaa
aaatcagcggcaaaactcttgaatgcaattgaaaaaagcaaaaagcagggatacgaccgc
ctattgtttgcgttgggaatccgtcacgttggccttgcgacagctcgtgaactttcggca
tcatatccttctctggaaaaactgcaggccactacggtcgaagagttggcgagtgttccc
gatatcgggccggtgattgccgaaagtgtcctcgcatttttcaaaaagccttatgcacag
gctatgatcgaaaagttcagagctgcggatgtgaaattgacggcagatgcttcaacgacg
ttggtaagccggagttttgatggcatgaaggtgatttttaccggcgggttggaacgctat
acccgaaacgaggcttcggagctggtactggagcggggagggaagatagtttcgtcggtc
agcaaaaacaccgatctggttgttgcgggaaaagagcccggcagtaaactggaaaaggcc
cgaaaacttggagtgaacgtggtctccgagcaggagttcgaagaaatgctggaacagaat
gaatatgaaatccgggagggccgtgttgatgcagcgtcgaattcggcataa
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