Pseudoalteromonas rubra: AT705_16445
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Entry
AT705_16445 CDS
T04179
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03030
DNA replication
prr03410
Base excision repair
prr03420
Nucleotide excision repair
prr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AT705_16445 (ligA)
03410 Base excision repair
AT705_16445 (ligA)
03420 Nucleotide excision repair
AT705_16445 (ligA)
03430 Mismatch repair
AT705_16445 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prr03032
]
AT705_16445 (ligA)
03400 DNA repair and recombination proteins [BR:
prr03400
]
AT705_16445 (ligA)
Enzymes [BR:
prr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AT705_16445 (ligA)
DNA replication proteins [BR:
prr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AT705_16445 (ligA)
DNA repair and recombination proteins [BR:
prr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AT705_16445 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AT705_16445 (ligA)
MMR (mismatch excision repair)
DNA ligase
AT705_16445 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AT705_16445 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
DNA_ligase_A_M
5_3_exonuc
HsbA
Motif
Other DBs
NCBI-ProteinID:
ALU44399
UniProt:
A0A0U3I8P2
LinkDB
All DBs
Position
1:3781941..3783962
Genome browser
AA seq
673 aa
AA seq
DB search
MSETISKQIKELRQQLEAYNYQYYVLDQPTVPDAEYDRVMRALIELETQHPDYVTPDSPS
QKVGGAALSKFQQVTHQVPMLSLDNAFDEAEFTAFNRRIKERLLHNEELDFCCEPKLDGL
AVSILYRDGVLVQAATRGDGQVGENITENVKTIRNIPLRLRGDDIPAELEVRGEVFMDKA
GFARLNETAAQRDEKTFANPRNAAAGSLRQLDPKITAKRPLMFYAYSMGVVQGAELADTH
YAQLQQLKEWGLPMCPQTKRVTGASAAYQYYEAIMAERDALPYEIDGVVIKVDHKPFQEQ
LGFVARAPRWAIAFKFPAQEELTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH
NRDEIERLGVRVGDTVIIRRAGDVIPQITQVVLDKRPADAREITFPATCPVCDSHIERVE
GEAVARCTGGLVCRAQRKEAIKHFSSRKALDIDGLGDKIVEQLVERELITTPAELFTLRQ
GHFESLERMGPKSAKNLVAALQAAKQTTLAKFMYALGIREVGEATAQNLANHYLTLENVM
NASIESLQEVSDVGVVVAQHIHAFFSEPHNQKVVSDLLEQGLHWPDIAAKEESEQPLAGL
TYVLTGTLSQLNRNDAKARLQALGAKVSGSVSKNTHALVAGEKAGSKLTKAQDLGIDILD
EAALIALLDSHQG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaactatcagcaaacaaatcaaagaattaagacagcaattggaagcctataac
taccaatattatgtcttggatcagccaacggtacccgatgcagaatatgaccgtgtaatg
cgtgccctgatcgagctggaaactcagcaccctgactatgtaaccccagactcaccgtct
cagaaagtagggggtgcagcgttgagtaaatttcaacaggtcacccaccaggtccctatg
ttgtcgctcgataatgcatttgatgaagctgaattcactgcttttaatcgccgcattaag
gaacgtctgctgcacaatgaagagttggatttctgttgtgaacctaaactggatggtctg
gctgtctctatcctttatcgggatggtgtgctggtccaggctgcaacacgcggcgatggc
caggtgggtgaaaatattaccgaaaacgtcaagaccatccgcaatattccactgcgcctg
cgtggcgatgatattcccgcagagctggaagtacgtggtgaagtctttatggacaaagcg
gggtttgctcgcctgaatgaaaccgcagcgcaacgcgacgaaaaaacctttgctaacccg
cgtaatgctgctgcaggaagcctgcgtcagctggaccctaaaattaccgctaagcggcca
ctgatgttttacgcctattcaatgggtgtcgtacagggcgctgagctggccgatactcat
tatgctcagctacaacagttgaaagagtggggcttgccaatgtgcccgcagacaaagcgg
gtaacaggcgccagtgcggcttatcagtattatgaggccatcatggctgagcgtgatgcg
ctgccttacgaaatagatggtgtagtgattaaggttgaccataagccatttcaggaacag
ctcggttttgtcgcacgtgcgccgcgctgggccattgcgtttaaattccccgcacaggag
gagttgacgcagttactggatgtcgagtttcaggtggggcgaaccggcgctattacaccg
gtagcgcgcctcgagcccgtattcgttgggggagtcacggtttctaatgcgaccttacac
aaccgggatgaaattgaacgtttgggcgtaagagttggtgatactgtcatcattcgacgt
gccggggatgtgatcccgcagatcacccaggtagtactggacaaaaggcctgcggatgcc
cgtgagattactttcccggctacctgcccggtgtgtgattcccatattgagcgggtagag
ggggaagcggttgcgcgttgtactggtggcttagtgtgccgtgcgcaacgtaaagaagcg
attaaacacttttcttcgcgtaaggcgttggatatcgatggactgggtgacaagattgtc
gagcaactggttgagcgtgagttgatcacgacgccagccgaattattcacattgcgtcag
ggacactttgagtcgctggagcgtatgggcccgaaatcagcgaaaaatttggttgcggca
ttgcaggcagcgaaacaaacgactctggccaagtttatgtatgcacttgggatccgagaa
gtgggtgaggccacggcacaaaacctggcgaatcattatttgacgcttgaaaacgtgatg
aatgcctccattgaaagtctacaggaagtcagcgatgttggcgtagtggtcgcccagcat
atccatgcgttcttctctgagcctcacaaccagaaagtggtgagtgacctgctagagcag
ggattgcattggcctgatattgcggcgaaggaagaaagtgagcaaccgcttgctggttta
acatacgttctgacaggtactttgagtcagctaaatcgcaatgacgccaaggcacgattg
caggcgttgggtgccaaagtatccggcagcgtgtcaaagaatacccatgcactcgttgca
ggcgaaaaagcgggttctaagctgactaaggcgcaggacctcgggattgatatcctcgat
gaggcggcgctgattgcactgcttgattcacatcaggggtag
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