Planococcus rifietoensis: AUC31_05380
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Entry
AUC31_05380 CDS
T04201
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prt
Planococcus rifietoensis
Pathway
prt03030
DNA replication
prt03410
Base excision repair
prt03420
Nucleotide excision repair
prt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AUC31_05380 (ligA)
03410 Base excision repair
AUC31_05380 (ligA)
03420 Nucleotide excision repair
AUC31_05380 (ligA)
03430 Mismatch repair
AUC31_05380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prt03032
]
AUC31_05380 (ligA)
03400 DNA repair and recombination proteins [BR:
prt03400
]
AUC31_05380 (ligA)
Enzymes [BR:
prt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AUC31_05380 (ligA)
DNA replication proteins [BR:
prt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AUC31_05380 (ligA)
DNA repair and recombination proteins [BR:
prt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AUC31_05380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AUC31_05380 (ligA)
MMR (mismatch excision repair)
DNA ligase
AUC31_05380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AUC31_05380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
Zn_ribbon_NUD
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ALS74690
UniProt:
A0A0U2J6V6
LinkDB
All DBs
Position
690134..692140
Genome browser
AA seq
668 aa
AA seq
DB search
MDRIKAEERVTELNELLRNYGHAYYVLDKPSVPDAVYDQLLNELIELENLYPDLIFPDSP
TQRVGGTPLSNFEKVRHERPMLSLSNVFNEEDLRDFDKRVRGGAGDSVEYVCELKIDGLA
VSLHYENGKFVRGLTRGDGRVGEDITVNLRTVRSIPLKLKEPVSIEVRGEVFMPKKSFHA
LNEDREERGEELFANPRNAAAGSLRQLDSKIAAKRNLDVFIYGIGGDGETYGLNNHNESL
QYLTDLGFKTNGERKVCRSVEEVLAYIEQWTDGRNQLSYEIDGIVIKVNRFLHQQDLGFT
AKSPKWATAYKFPAEEVMTTVRDIELSIGRTGVVTPTAILEPVAVAGTTVQRASLHNEDL
IRERDIRINDKVIIRKAGDIIPEVVKALIEMRSGDELPFEMPTECPACASELVRIEGEVA
LRCVNPKCPAQIVEGMIHFVSRNAMNIDGLGEKVIEQLYREGLIHDISDLYALTKEQLLE
LERMGDKSATNLIEAIAASKSNSMERLLFGLGIRHVGERGARILSEHFGSMDQLMQANLE
ELIAIHEIGDKMADAVVTYFEKEEVAALVERLRERGVNLSYTGTIVRVEEGANAFAGKKI
VLTGKLENMTRQEAGERIEALGGKLTGSVSKKTDLLIAGEEAGSKLDKAQDLGVEVWNEE
RLLMELNE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcatcaaagctgaagaacgtgtaaccgaattgaatgaattgctccggaactac
gggcatgcctattatgtgctcgataagccaagcgtgccggatgccgtgtacgatcaattg
ctcaacgaattgatcgagctggagaacctatatcccgatttgattttcccggactcccca
acgcaacgggtcggggggacacccttgtcgaatttcgagaaagtccgccacgagcggccg
atgctcagtttgtcgaacgtctttaacgaagaagatttgcgtgatttcgataaacgtgtg
cgcggcggtgccggggactcggtcgaatatgtgtgcgaactgaaaattgacggcctggcc
gtttcgcttcattacgaaaacggcaaattcgtgcgcggtttgacgcgcggcgacggccgt
gtcggagaagacattacggtcaacctccgcacagtccgctcgattccgcttaaattaaaa
gagccggtatcgatcgaagtgcgcggcgaagtgttcatgccgaaaaaatcgttccatgca
cttaatgaagaccgcgaggagcggggcgaagaattattcgccaatccgcgcaatgctgca
gccggttctttgcgccaattggattcaaaaattgccgctaagcgcaatttggatgtcttc
atctacggcattggcggagacggggaaacttacggcttgaacaaccataacgagtccctt
caatatttgacggatctcggctttaaaacgaacggcgagcggaaagtttgtcgctcggtg
gaagaagtgctggcatacattgagcaatggacagatgggcgcaaccagttgagctatgaa
attgatggcatcgtcattaaagtcaatcgctttttgcaccagcaagacctcgggttcacg
gcaaaaagcccgaaatgggcgaccgcctataaattcccggcagaagaagtgatgacgacc
gtacgtgatatcgagctgagcataggccggaccggcgtcgtcaccccgacagctattctt
gagcctgtcgctgttgccggcaccacggtgcagcgtgcgtctctccataatgaagacttg
atccgggagcgcgatatccgcatcaatgataaagtgatcatccgaaaagcgggcgatatc
attccggaagtcgtcaaggcgctgattgaaatgcgctccggcgacgaactgccgtttgaa
atgccgaccgaatgccccgcatgcgcaagcgaattggtccgcattgaaggggaagtggcg
ctgcgctgcgtcaacccgaaatgcccggcgcaaatcgtcgaaggcatgatacatttcgtt
tcgcgcaatgccatgaatattgacgggctcggtgagaaagtgatcgagcaattatatcgc
gaagggctcatccacgatatttcggatctctatgctttgacgaaagagcaattgttggaa
ctcgagcgcatgggcgataaatccgccaccaacttgatcgaggcgatagcagcttccaag
agcaattcgatggaacgcttgttgttcggccttggcattcgccacgtcggtgaacgcggg
gcgcgcatcttgtcggagcatttcggctcgatggatcaattgatgcaggcaaacttggaa
gaattgattgccatccatgaaatcggcgataagatggccgatgcagtcgtcacctatttc
gaaaaggaagaagttgcagcacttgtggaacgtttacgcgagcgaggcgtcaatttatcc
tacacgggcacaatcgtccgcgtagaagaaggcgccaatgcgtttgccggcaagaaaatc
gtgctgaccggtaagttggaaaacatgacccgccaggaagccggcgaacggatcgaggca
ctcggcggcaaattgaccggcagcgtcagcaagaaaaccgatttgctgattgccggcgaa
gaagccgggtccaaactcgacaaagcgcaggatctcggcgtagaagtgtggaacgaagaa
cgcctgcttatggaattgaacgaataa
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integrated database retrieval system
