Pyrgilauda ruficollis (rufous-necked snowfinch): 121350564
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Entry
121350564 CDS
T07608
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121350564 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pruf03041
]
121350564 (EFTUD2)
Spliceosome [BR:
pruf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121350564 (EFTUD2)
Complex C
U5 SnRNP specific factors
121350564 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
121350564
NCBI-ProteinID:
XP_041317919
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGREAKDLDELEDDDDDDDMGEHDEEHAGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactacatcgggcccgagttggactcggac
gatgacgacgacgagctgggccgagaggccaaagacctggacgagctggaggatgatgat
gatgatgatgacatgggggagcacgacgaggagcacgctgggatggaggtggtgctgcac
gaggacaagaagtactaccccacagcagaggaggtctatgggcctgaggtggagaccatc
gtgcaggaggaggacacacagccactcactgagcccattatcaaacctgtgaaaaccaag
aagttctccctgatggagcagacactgccggtcactgtctacgagatggatttcctggca
gatctgatggacaactcggagctgatccggaatgtgactctgtgtgggcacctgcaccac
ggcaagacttgttttgttgactgcctgatagagcagacgcacccggaaatccggaagcgc
gacgatcaggatctctgctacactgatatattgttcacagagcaggagaggggggtgggg
atcaagagcaccccagtgacaattgttctgccggacaccaaaggaaaatctttcctcttc
aacatcattgacactccaggtcatgtgaatttctctgacgaggtgacagccggcctgcgc
atctcggacggcgtcgtgctcttcatcgacgcggccgagggggtgatgctgaacacagag
aggctgatcaagcacgccgtgcaggagaggctggcagtgactgtgtgcatcaacaagatt
gacagactcatcctggagctgaaactgccccccacagatgcttactacaagctcagacac
attgtagatgaagttaatggtctgatcagcatgtattccaccgatgagaacctcgtgctg
tctccccttctggggaacgtgtgcttctccagctctcagtacagcatctgcttcacactg
gggtcttttgcaaagatttatgcagacacatatggagacatcaattaccaggagtttgca
aagcggctttggggcgacatctacttcaacccgaagacccgcaagttcaccaagaaggcc
ccaacgagcagctcccagcgcagcttcgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggggatgtggacacaaccctgcccaggactctggatgagcttggc
atccacctgaccaaagaggagttgaaactgaacatccggcccctgctgcgactcgtctgc
aagaaattctttggggagttcacaggctttgtggacatgtgtgtgcagcacattccctcc
ccaaaagtgggggccaagacaaaaattgagcacacctacaccggcggtgtcgactccgac
ctgggggaggccatgagcgagtgcgaccctgacggtcccttgatgtgtcacacaaccaaa
atgtacagcactgatgatggtgtccagttccacgcctttggcagggtgctcagtggcacc
atccatgctgggcagcctgtgaaggtccttggggagaactacaccctggaagatgaggag
gattcccagatctgcaccgttggacgcctctggatctcagttgcaaggtatcacattgag
gtgaacagagttcctgctggcaactgggtgctgattgagggcgtggaccagcccatagtg
aagacagcaactgtgacagagcctcggggcaatgaggaggctcagatcttccgtcccttg
aagttcaacaccacatctgttatcaaaatagctgtggagccagtcaacccctcagagctc
cccaaaatgttggatggtctccgcaaagtcaacaagagctacccctcacttacaactaag
gtggaagagtctggggaacatgtgatcctgggaacaggagagctgtacctggactgtgtg
atgcacgacctgcggaagatgtactccgagatcgacatcaaggtggctgatccagtggtg
acattctgtgagacagtggtggaaacatcctccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacaatgattgctgagcccctggagaagggactggcagaggacatt
gagaatgaagtggtgcagataacgtggaacagaaagaagctgggtgaattcttccagacc
aaatacgactgggatttgctggctgcccgttccatctgggcctttgggccagatgccact
ggcccaaacatcctggtagatgacacactgccctcagaggtggacaagtctctgttgggt
tcagtgaaggacagcatcgtgcagggcttccaatgggggaccagggaaggacccctctgt
gatgaattgatccgcaatgtgaagttcaagatcctggatgcagtgattgctcaggagccc
ttgcacaggggtggagggcagatcatccccacggcccgcagggtggtgtactctgccttc
ctcatggccacccctcgcctgatggagccctactacttcgtggaggtccaggcccctgct
gactgtgtgtctgccgtgtacacggtgctggcccggcgcagaggccacgtgacccaggat
gctccaatcccaggctctcccctctacaccatcaaagccttcatcccagccattgattcc
tttggctttgagacagacttgaggacccacacgcagggacaagccttctctctctctgtc
ttccaccactggcagattgtgcctggggaccccttggacaagagcatcgtcatccggccg
ctggagccgcagccagccccacacctggccagggagttcatgatcaagaccaggcgtagg
aagggcctgagtgaggacgtgagcatcagcaagttcttcgacgaccccatgttgctggaa
ctggccaagcaggacgtcgttctcaactaccccatgtaa
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