Pyrgilauda ruficollis (rufous-necked snowfinch): 121355944
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Entry
121355944 CDS
T07608
Symbol
ABCD4
Name
(RefSeq) lysosomal cobalamin transporter ABCD4 isoform X1
KO
K05678
ATP-binding cassette, subfamily D (ALD), member 4 [EC:
7.6.2.8
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf02010
ABC transporters
pruf04146
Peroxisome
pruf04977
Vitamin digestion and absorption
pruf04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121355944 (ABCD4)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
121355944 (ABCD4)
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
121355944 (ABCD4)
04980 Cobalamin transport and metabolism
121355944 (ABCD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pruf04131
]
121355944 (ABCD4)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pruf02000
]
121355944 (ABCD4)
Enzymes [BR:
pruf01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.8 ABC-type vitamin B12 transporter
121355944 (ABCD4)
Membrane trafficking [BR:
pruf04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
121355944 (ABCD4)
Transporters [BR:
pruf02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
ABCD4 subgroup
121355944 (ABCD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_16
AAA_30
AAA_7
SbmA_BacA
AAA_22
DEAD
AAA_23
nSTAND1
nSTAND3
DUF6079
Motif
Other DBs
NCBI-GeneID:
121355944
NCBI-ProteinID:
XP_041327789
LinkDB
All DBs
Position
Unknown
AA seq
648 aa
AA seq
DB search
MNIHVERPRGRDRPGRAARVRRAPMAGGSRRAGGAGAGGRAGSRLDGLFLRRFLRLLAVL
FPGWPSPSALMFLTLLGVALLEQLVIYQVGVIPSQYYEVLGNKDFSGFKTLTAVAVTLII
VNSTLKSFDQFICNMMYVNWRKSLTEYLHRCYFQGQVYYNLLVLREDVDNPDQRISQDVE
RFCRQLSSMASKLVISPFTLAYYTYQCFHSTGWLGPVSIFGYFVIGTMINKVLMSPIVSK
LVQQEKLEGDFRFKHMQIRVNAEPAAFYRAGRVEHMRTNRRLQSLLKTQRELIGKELWLY
IGINTFDYLGSILSYVVIAIPIFSGVYGDLNPTELSALVSKNAFVSIYLIGCFSQLIDLS
STVTDVAGYTHRIGELQETLLSLGNKKNDNYSEAKTSWDLDRWWPSSHSGEDPVPRDTAF
LLERVTLSVPSSGKLLIKDLSLNISQGNSVMIVGNTGTGKTSLLRVLGGLWESTRGSIRM
LTCFGPRGVVFLPQRPFFTDGSLREQVIYPLKEIYPLSGSADDERIVRFLELAGLTDLLA
RAGGLDEQVDWNWYDILSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVEHELYRMCL
QLGMTLISVGHRPSLEKFHSWILKLHGEGRWELTRCEKMKRLPSEEEY
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaatattcatgtggagcgcccgcgggggcgggaccgtccgggccgggccgctcgggtc
cggagggcgccgatggcggggggcagccgcagagcggggggcgccggggccggcgggcgg
gctggttcccggctggacgggctgttcctgcggcggttcctacggctcctggccgtgctc
tttcctgggtggccctccccgagcgcactcatgttcttgacgctgctcggtgtcgccttg
ctggagcagctggttatttaccaggtcggcgtcatccccagccagtactatgaggtgcta
gggaacaaggacttctccggattcaaaacattgactgccgttgctgtgactctgatcatt
gtgaactccacgctaaaaagtttcgaccagtttatctgcaacatgatgtatgtgaactgg
aggaaatccctcactgaatacctccaccgctgctacttccaaggccaggtctactacaac
ctgctcgtgctgcgtgaggacgtcgataacccggaccagcgcatcagccaggacgtggag
aggttctgcaggcagctcagctccatggccagcaagctcgtcatctcacccttcacactg
gcctactacacataccagtgctttcacagcacaggttggctgggcccggtgagcatcttt
gggtatttcgtcattgggacgatgattaacaaagtgttgatgagcccaattgtgtctaaa
cttgtgcagcaggaaaaactggagggagatttcaggttcaagcacatgcagattcgtgtc
aatgcagaaccagctgctttctacagggctgggcgagtggagcacatgcgcacaaaccgg
aggctgcagagcctgctgaagacccagagagagctgataggcaaagagctgtggctgtac
attgggatcaacacctttgattatctgggcagcatcctgagctacgtggtcattgccatt
cccatcttttctggggtctacggcgacctgaatccaacagagctcagtgcccttgtcagc
aagaatgcctttgtttccatctacctcattggctgcttcagccagctcatagatctctcc
agcactgtgactgatgtagctggctacacacacaggattggtgaactgcaggagaccttg
ctgagccttggcaacaaaaaaaatgataactactcagaagccaaaaccagttgggatttg
gacaggtggtggcccagcagccattctggggaggacccagtgccaagggacacagctttc
cttctggagcgagtgacactctcagtaccatcctctggcaagctgctcatcaaggacttg
agcctcaatatctcacaaggaaacagtgtgatgattgtgggaaacactggtacagggaag
acatctctcctgagggtcctcggaggactctgggagagcacacgggggagcatcaggatg
ctgacctgctttggcccccgaggagtggtgttcctaccacagaggcccttcttcactgat
ggaagcctgcgtgagcaggtgatctatcccctgaaggagatctatccactttcagggtct
gcagatgatgagaggattgtgcgattcctggagctggctgggctgactgatttgctggca
agggctggaggactggatgaacaggtggactggaactggtatgacatcctgtccccaggg
gagatgcagaggctctcatttgcacggctcttctacctccagccaaaatatgcagtgtta
gatgaagccaccagcgccttgacagaagaggtggagcatgaactgtaccgtatgtgcctt
cagctgggcatgacactgatcagtgtgggacacagacccagcctggaaaagttccacagc
tggattttgaaacttcatggggagggaagatgggagctcactagatgtgagaagatgaag
cggctcccctctgaggaagaatactga
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integrated database retrieval system
