Pyrgilauda ruficollis (rufous-necked snowfinch): 121363780
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Entry
121363780 CDS
T07608
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04622
RIG-I-like receptor signaling pathway
pruf04623
Cytosolic DNA-sensing pathway
pruf05164
Influenza A
pruf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121363780 (DDX58)
04623 Cytosolic DNA-sensing pathway
121363780 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
121363780 (DDX58)
05168 Herpes simplex virus 1 infection
121363780 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pruf04054
]
121363780 (DDX58)
Enzymes [BR:
pruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121363780 (DDX58)
Pattern recognition receptors [BR:
pruf04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
121363780 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_19
AAA_25
AAA_22
Motif
Other DBs
NCBI-GeneID:
121363780
NCBI-ProteinID:
XP_041342352
LinkDB
All DBs
Position
Unknown
AA seq
927 aa
AA seq
DB search
MTAEEKRNLQCYRRYIERSLNPVYILSNMTAWLSDEVKERVRKEEEKGVTAAAALFLDAV
LLLEAEGWLRGFLDALVAAGYTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEIDPVA
IMPYINTCLIERECEEIMQISEYRSKAAGITKLIECLCRSDKENWPKSLQLALDNAGYYN
ASELWNIREDNGKDVDGEMTDVSENYFDTVMTFSEEAECDNLSKNLSSVSESICESSSVY
EPMKARSYQIELAQPAIDGKNTLICAPTGSGKTFVALLICEHHLQNVPSGRRAKVVFLAT
KVPVYEQQKNVFRQHFERSGYSVQGICGETVANISVENVIQDSDIIVLTPQILVNSMEKG
ILSSLSVFTLMIFDECHNTTGNHPYNVLMTRYLDQKFDSSANQLPQIVGLTASVGVGNAK
STNETVEHICTLCSYLDIQAISTVRENKQDLQRFGNKPETHIRWVKMRAQNHFADIISGL
MSETEVLMRKIYSVDTISQVNKSYFGTQRYEHWIVSTQKKCRLLQLEDKERESSICRDLF
ICTEHLRKFNDALIISEDARIEDALAYLNDFFTNVKNGPYTELEKQLTEKFQEKELELTA
LSKDESNENPKLEELACILDEAYHYNPQTRTILFAKTRALVAALKKWIEGNPLLSHIKPD
VLMGKGRRDQKTGMTLPMQKGVLDAFRNDKDIRLLIATSVADEGIDITECNLVVLYEYFG
NVTKMIQVRGRGRARDSKCILVTSKTEVVENEKLNSYKEEMMNAAIEKLQNWDETTFARK
IRGLQMKEKMLRDSRKNETKHEIVEGKKKLLCGKCKTYVCSTDDIRIIKDAHHIVLGDAF
RERYTTKPHKKRIQFDGFEKKSKMHCRNTECQHDWGIIVKYKVFDDLPVIKIRSFVLEDV
ETGTQMDFQKWKSINLSLKNFDEETSS
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggaggagaagcgaaacctgcagtgctaccggcgctacatcgagaggagcctg
aaccccgtgtacatcctcagcaacatgacggcgtggctgtccgacgaggtgaaggagcga
gtccgaaaggaggaggagaagggcgtcacggcggccgccgcgctgttcctggatgccgtg
ctgctgctggaggcggagggctggctccgcggcttcctggatgccctggtcgcagcaggt
tacactggactggcagaagcaattgaaaactgggacttcagcaaactggagaaactggag
ctgcacaggcaactgttgaagcggatagaagcaacaatgttagaaattgatcctgtagca
atcatgccatacataaacacatgcctgatagagagggagtgtgaagagatcatgcagatc
agtgaatacagaagcaaagcggccgggataactaaactcattgaatgcctctgtcgctcg
gataaggaaaattggcccaaaagtcttcagctggcattggataatgcaggatattacaat
gcaagtgaactgtggaatataagagaagataatggcaaagatgttgatggtgaaatgaca
gatgtctctgagaattactttgacaccgtgatgacattttctgaagaagcagaatgtgat
aatctgagcaaaaatctctcttcagtttcagaaagcatctgtgagtcttcatctgtttat
gaaccaatgaaggctcgaagctaccagattgagcttgcacagcctgctattgatgggaaa
aacacattgatttgtgcccccacaggatctggaaaaacttttgtggcacttctgatttgt
gaacatcatttgcaaaacgttccctcaggacgaagggcaaaagttgtcttccttgcaacc
aaagtgccagtgtatgagcagcagaaaaatgtattcaggcagcattttgaaagaagtgga
tattctgttcaaggaatttgtggtgaaacagttgcaaatatctctgtagaaaatgttata
caggacagtgacatcattgtgctaacaccccagattcttgtgaatagcatggagaaaggg
atccttagctccctctccgtcttcactctgatgatatttgatgagtgccacaacactaca
ggcaaccatccctacaatgtgttgatgacccgatacctggatcaaaaatttgactcctct
gcaaaccagctgcctcagattgtaggtttaactgcttctgttggagttggtaatgccaag
agcactaatgaaactgtagagcacatctgtaccctctgctcctaccttgacatacaggcc
atatccactgtcagagagaacaaacaagatctgcagaggtttggaaacaagccagaaaca
catatcagatgggttaaaatgcgagctcagaatcactttgcagacattatctcaggtctg
atgtctgagacagaggtgttgatgaggaagatttactcagtggataccatctcccaagtc
aacaagagttactttggaacacagagatatgaacattggatagtttccactcagaagaaa
tgcagactattgcaactggaagataaggagagggagagcagtatttgtagagaccttttc
atttgtactgaacacttgcggaaattcaatgatgctctcattatcagtgaagatgcccgc
atcgaagatgctttagcctacctaaatgattttttcacaaatgtaaaaaacggaccatat
acagagttagagaagcagctgacggagaaatttcaagagaaagaactagagctgactgcc
ctttcaaaagacgagtcaaatgagaatccaaagttggaagagcttgcttgcatcctggat
gaagcataccactataacccacagactcgcactattctctttgccaagacaagagcctta
gtagctgctttgaagaagtggatagaaggaaaccctcttcttagccacataaagccggat
gtgttgatgggtaagggaagaagagatcagaaaacaggtatgaccctgccaatgcagaag
ggtgtactggatgcattcagaaatgacaaagacatcagactgctaattgctacatctgtt
gctgacgaaggcattgatattactgagtgtaaccttgtggtgctctatgaatacttcggt
aatgtcaccaaaatgatccaagttagaggtcgtggaagggcaagagacagcaagtgcatc
cttgtgacaagcaaaacagaagtggttgagaatgaaaaactaaacagttacaaggaagaa
atgatgaatgcagctattgaaaagctacagaactgggatgaaacaacatttgcaagaaag
atacgtggcctgcaaatgaaggaaaagatgctacgagattccaggaagaatgaaacaaaa
catgaaatagtagaagggaaaaaaaaacttttgtgtggaaaatgcaaaacctatgtctgc
agtacagatgacatcagaattataaaggatgctcatcacattgtcttaggtgatgcgttc
agggagcgttatacaacaaagccccacaagaaacggattcagtttgatggttttgagaaa
aaaagcaagatgcattgccgaaatactgagtgccagcatgactgggggatcatagtgaag
tacaaggtatttgatgatctaccagtgatcaaaatcagaagctttgtactagaggatgtt
gaaactgggacacaaatggattttcagaaatggaaaagtattaatttgtctttgaagaat
tttgatgaagaaacatccagctga
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integrated database retrieval system
