Paenibacillus rhizovicinus: GZH47_18670
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Entry
GZH47_18670 CDS
T06983
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prz
Paenibacillus rhizovicinus
Pathway
prz03030
DNA replication
prz03410
Base excision repair
prz03420
Nucleotide excision repair
prz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GZH47_18670 (ligA)
03410 Base excision repair
GZH47_18670 (ligA)
03420 Nucleotide excision repair
GZH47_18670 (ligA)
03430 Mismatch repair
GZH47_18670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prz03032
]
GZH47_18670 (ligA)
03400 DNA repair and recombination proteins [BR:
prz03400
]
GZH47_18670 (ligA)
Enzymes [BR:
prz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GZH47_18670 (ligA)
DNA replication proteins [BR:
prz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GZH47_18670 (ligA)
DNA repair and recombination proteins [BR:
prz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GZH47_18670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GZH47_18670 (ligA)
MMR (mismatch excision repair)
DNA ligase
GZH47_18670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GZH47_18670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
DUF669
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QHW35171
UniProt:
A0A6C0P9X8
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All DBs
Position
4174274..4176307
Genome browser
AA seq
677 aa
AA seq
DB search
MEPGSNADSTKQLRMRELIDLLAVHNHNYYTLDQPTISDVQYDELYDELVGLEQQSGLTL
PDSPTQRVGGEILKGFEPHRHRARLWSLDKAQDAEDLLAWNTRVRKAIADYNTKNPDAAP
LPDPSYAIELKFDGLTLNLTYDGGNLVQASTRGNGTVGEGILAQVKTIRSIPLSIPFTDG
LIEVQGEGIMNLSVLAAYNTTAVEPLKNARNAAAGALRNQNPRITAERKLNAYFYNVGFA
EGVSFDTHQEMIQFLRDNRFKVNDYTSYCATIEEVQAELERVAAGRHEHDFLIDGAVVKL
TDMRTRETLGYTDKFPRWAVAFKFEAEETTTILESVSWEVGRTGKITPVARVEAVDLAGV
TVQNCTLNNIGDIERKNLKFALGTHVFIRRSNDVIPEILGKADEEPGLEIVAPTECPSCG
TTLELRGAHLFCNNKLGCRPQTIGRITHFSSRDAMDIESFSIMTAEQLFDDCGVRDPADL
YALTYDNLIGLERFGDRKARKLLEALEKSKDRDLAAFLFALGIPNTGKATTKMLAEHFGN
LAAIRVAEVEELVGLPDVGGIVAESIYSYFRDPVSASSIDRMLMLGVKAETEQSAPARTD
SVFSGKTVVLTGTLSQMTRDEAAKKLEALGAKISGSVSKKTDFVIAGESAGSKLTKAQEL
GVTVIEDEQELLRLLGE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgggatcgaatgccgattcgacgaaacaactccgtatgcgtgagctgatcgac
ctgctagcggtccataatcataactattacacgctggatcaaccgacgatcagcgacgtg
cagtatgacgagctctacgatgagctcgttggactggaacagcaaagcgggcttacgctc
cctgactcgcctacgcagcgggtaggcggcgagattttgaaaggctttgagccgcatcgc
catcgtgcccgtttatggagtctcgacaaagcgcaggatgcggaggatttattggcatgg
aatacgcgtgttcggaaagcaatcgccgactacaacaccaagaacccggatgcggctccg
cttcccgatccgtcttatgccatcgaattgaagtttgacgggcttaccttgaatttgacg
tatgacgggggcaatctcgtgcaggcgtccacgcgtggcaacggcacggttggagaagga
atattggcgcaggtcaagacgattcgttccatcccgctcagcattccgtttacggacggt
ctaattgaagtgcaaggcgaaggtatcatgaacctgtcggtactggcagcttacaataca
acggcggttgaaccgcttaagaatgcccgcaatgcggcggccggggcgcttcgcaaccag
aatccaaggattacggcggagcgcaaactgaatgcttacttctataatgtcggctttgcg
gaaggcgtttcgttcgacacccatcaagagatgattcagtttctgagagacaatcgtttc
aaggtgaatgactatacgagctattgcgccacgatagaagaggtgcaggccgaactggaa
cgcgttgccgccggccgccacgagcatgatttcctcatcgacggagccgtggtcaagtta
actgacatgcgcactcgggagacgcttgggtatacggacaaatttccgcgttgggcagta
gccttcaagtttgaagcggaagaaacgacgacgatcttggagtcggtctcttgggaagtt
ggccgtaccggcaaaatcactccggttgcacgcgtcgaagccgtcgatctcgcaggcgtc
accgttcagaactgcacgctcaacaatatcggcgatatcgaacgcaagaacctaaagttc
gcgctaggcacccatgtgtttatccggcgctccaacgatgttattccggagattctggga
aaggcggacgaggagcccggtcttgagattgtcgccccgacggaatgtccgtcctgcggc
acgacgctcgagcttcgcggcgcgcatttgttctgcaacaacaaacttggctgcagaccg
caaacgattgggcgcattacgcacttctcctcccgcgatgcgatggacatcgagtcgttc
agcatcatgacggcagaacagcttttcgatgattgcggcgttcgggacccggctgacctc
tatgcgttgacctacgacaatctcataggcttggagcgcttcggcgaccgcaaagcgcgt
aaattgctggaggcgctggagaagtccaaggatcgcgatctcgcggcattcctgtttgcc
cttggtattcccaacacgggaaaagcaacgaccaagatgctggctgagcatttcggcaat
ctcgcggcaattagggtggccgaggtcgaagagctcgtgggcttgccggatgtcgggggc
attgtggccgagagcatctatagttatttccgcgatcccgtctcggcgagcagtatcgac
cgcatgctcatgctgggggtcaaggcagagaccgagcagagtgcaccggcaaggaccgac
agtgtattcagcggcaaaaccgtcgtgctgacaggcacgttatcgcaaatgacaagggac
gaggcagcgaagaagctggaagcgctcggcgccaaaatcagcggcagcgtctcgaagaag
accgactttgtcatagcgggggagagcgccggcagcaagctgaccaaggcgcaagagctt
ggcgttaccgtcattgaggatgagcaggaattgctgagactactaggtgaataa
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