Stutzerimonas stutzeri A1501: PST_1857
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Entry
PST_1857 CDS
T00511
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psa
Stutzerimonas stutzeri A1501
Pathway
psa03030
DNA replication
psa03410
Base excision repair
psa03420
Nucleotide excision repair
psa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PST_1857 (ligA)
03410 Base excision repair
PST_1857 (ligA)
03420 Nucleotide excision repair
PST_1857 (ligA)
03430 Mismatch repair
PST_1857 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psa03032
]
PST_1857 (ligA)
03400 DNA repair and recombination proteins [BR:
psa03400
]
PST_1857 (ligA)
Enzymes [BR:
psa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PST_1857 (ligA)
DNA replication proteins [BR:
psa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PST_1857 (ligA)
DNA repair and recombination proteins [BR:
psa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PST_1857 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PST_1857 (ligA)
MMR (mismatch excision repair)
DNA ligase
PST_1857 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PST_1857 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ABP79531
UniProt:
A4VKN0
LinkDB
All DBs
Position
2007649..2010057
Genome browser
AA seq
802 aa
AA seq
DB search
MRSESAQPQSRLRPMPSAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELK
ALEAEHPELVTPESPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLD
LPAGDLFGDGAVVEYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNI
PLKLHGSGWPAVLEVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKIT
ASRPLELCAYGVGRSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAIGAK
RDALPYEIDGVVFKVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGA
ITPVARLKPVQVAGVTVSNATLHNMDEVARLGVMIGDTVIVRRAGDVIPQILGVIAERRP
TDARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFV
SRRAMDIDGLGDKIVEQLVDKGLVRSPADLYCLTHEQVIELEGFAEISTRNLLHAIDASR
KPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFF
EDEHNRTVIALLRERGVEPQEQGDVHPEFAACATLPDLLDRLNIPHIARTGAQRLAERFG
SLEAIIAADWLDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLREFGMHWESERKA
AEGLPLAGQTWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKA
NELGVTVLDESQFIERLAQLGS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgcggtctgaatcagcacagccccagtcacggcttcgtcctatgccttctgcccaaacc
gccgccgagcgtattgccgaactacgcagcgaaatcgacgcccacaactaccgctactac
gtgctcgacgaacccagcgttcccgatgcggagtacgaccgcctgttcaacgaactcaag
gcgctcgaggcggagcacccggagctggtgacacccgagtcgccgacccagcgggtcggc
ggtgcggcgctggcggcgttcggtcaggtacgccatgaagtgcctatgttgagcctgggc
aatgccttcgaggagcaggacctgctcgatttcgaccgccgcgtgcgcgaaggcctggat
ctgccagcaggcgacctgttcggagatggcgcggttgtcgaatacagctgcgaacccaag
ctcgacggtctggcggtcagtctgctctacgaaaacggccatctggtgcgcggtgctacc
cgcggcgatggcagcaccggcgaggacatcagcgccaatgtgcgcaccgttcgcaacatc
ccactcaagctgcatggcagcggctggccggcggtgctcgaggtgcgcggcgaaatctac
atgcccaaggccggcttcgaagcgctcaatgcgcgacagctggaaagcggcggcaagccc
ttcgccaatccccgtaatgccgcagccggcagcctgcgtcagctggattcgaagatcact
gccagccgtccgctcgaactttgtgcctacggcgtcggccgcagtgacggtgagctgcct
gacacgcacatcggcatcctccaggccttgaaaggctggggtctgcccatcagtcgcgaa
ctgaagctggccaagggcgttgccgaatgccgcgcctattacgacgccatcggtgcaaag
cgcgacgcgctgccttacgaaatcgacggcgtggtgttcaaggtcaatgccgtcgagcag
cagcgcgaactgggcttccgtgcacgcgaaccgcgctgggccatcgcccacaagtttccc
gcgcgggaagagatcaccgagctgctcgacgtggagttccaggttggccgtactggtgcc
atcaccccggtcgcccggctcaagcccgtgcaggttgcaggcgtcacggtgtccaacgca
accctgcacaacatggacgaagttgcacgtctgggcgtgatgatcggcgatacggtaatc
gtgcgccgcgccggtgacgttattccgcaaatcctcggcgtgatcgccgagcgtcgcccc
accgatgcccgcgctgtgcatgtgccagagcaatgcccggtgtgcggttctgccgtggag
cgcacccaattgatcaagcgcagcaaggggcgtgaatcggtcagcgagggctcgatctac
cgctgtgtggggcgcctggcctgtcaggcgcagctgaagcaggcgatcattcatttcgtt
tcgcgccgcgccatggatatcgatgggctgggcgacaagatcgtcgagcagttggtcgac
aaggggctggtccgttctccggcggatctctactgccttacccacgagcaggtcattgag
ctggagggtttcgccgagatatccacgcgtaacctgctccacgccatcgatgccagtcgc
aaaccgagtctcgcgcggttcgtttatgcgctcggcatcccggatgtcggagaggaaacc
gccaaattgctggcacgcgcgctgggttccctggaccgaatcggccgggcactgccggac
gtgctcgtctacctgcccgacgtggggctggaagttgcccacgaaatccacagcttcttc
gaggacgaacacaaccgcacggtcatcgcgctgctgcgtgagcgtggcgtcgagccgcag
gagcagggcgacgtgcatccggaattcgcagcctgcgcgacactgcccgacctgctcgac
cggctcaacattcctcatatcgctcgcaccggtgcccagcgactggcagagcgtttcggc
tcgctcgaggcaatcatcgccgccgactggctcgacctgcgtcaggtagagcgcctcacc
gaaaaggccgcacgttccctgcgcgactacttcgacaaacccgagaacgccgagcgcgcc
cgtttgatcgaagcccagctgcgggagttcggcatgcattgggaaagcgagcggaaagcc
gccgaaggcctgccgctggctggccagacctgggtgctgaccggcacgctggaaaccatg
agccgtgatgaaggcaaggcgcggctggaggcgttgggagcaaaggtcgcagggtcggtg
tccgccaaaactacctgcgtggtggcaggccccggcgctggctcgaagctcaccaaagcc
aatgagctcggtgtgacggtactggacgaatcgcagttcatcgagcgcctcgcacagctt
ggttcatag
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