Proteiniphilum saccharofermentans: PSM36_2522
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Entry
PSM36_2522 CDS
T04672
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psac
Proteiniphilum saccharofermentans
Pathway
psac03030
DNA replication
psac03410
Base excision repair
psac03420
Nucleotide excision repair
psac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSM36_2522 (ligA)
03410 Base excision repair
PSM36_2522 (ligA)
03420 Nucleotide excision repair
PSM36_2522 (ligA)
03430 Mismatch repair
PSM36_2522 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psac03032
]
PSM36_2522 (ligA)
03400 DNA repair and recombination proteins [BR:
psac03400
]
PSM36_2522 (ligA)
Enzymes [BR:
psac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSM36_2522 (ligA)
DNA replication proteins [BR:
psac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSM36_2522 (ligA)
DNA repair and recombination proteins [BR:
psac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSM36_2522 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSM36_2522 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSM36_2522 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSM36_2522 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Auto_anti-p27
HHH
TF_Zn_Ribbon
RNA_ligase
zf-NADH-PPase
BRCT_2
PTCB-BRCT
zf-ribbon_3
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
SCD21323
UniProt:
A0A1R3SYQ3
LinkDB
All DBs
Position
I:complement(3163185..3165182)
Genome browser
AA seq
665 aa
AA seq
DB search
MESVKLQIESLRSQLHEHNYNYYVLSQPTISDFEFDRLMRQLMELEAAYPEYYDPNSPSV
RVGSDINNNFTQVVHRFPMLSLQNTYSEGEVTDFYNRVKRTLNEEFEIVCELKFDGTSIS
LVYENGRLTRAVTRGDGRKGDDVTANARTIRNIPLVLKGDDVPPYIEVRGEILMPWSSFD
ALNKERAEQEEPLFANPRNAASGTLKMQDSRVVASRKLESYIYSMLGDSLPSRSHFENMT
LARGWGLNVSDTMRKCGTLEEIFAYLKEWDVARKTLPVITDGVVLKVDSLTQQRNLGATS
KFPRWSIAFKFSAEQAVTRLESVSYQVGRTGAVTPVANLEPVLLSGTTVKRASLYNEDAI
LALDLHIGDRVYVEKGGEIIPKITGVDKEARFLLGDRVTFTRKCPDCGTPLVRNEDEAAY
YCPNSEGCPTQIKGRIEHFVTRKAMDITIGPETINLLYEKGLISDAADLYRLRFEDLVYL
ERWGQTSANNLLESIERSKSVSYERVLYALGIRFVGETVARKLAQAFPDIDQLAQATVEQ
LVAVDEIGERIARSVTAYFANTLCVDFVRRLRQYGLQFALSQEMLAAKTDKLKGLSIVIS
GTFELHSRDEYKAMILQNGGKNSGSVSKNTDYILAGENMGPAKLEKAGKLGVKIIDEKAF
LEMLQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagtcaaactgcagattgagtcgcttcgcagccaactgcatgaacataattat
aactattacgtattgtcgcaaccaacgatttctgattttgaattcgaccggttgatgcga
caactgatggaattggaagcagcataccctgagtattatgaccctaactcgccatcggta
cgggtgggaagcgatattaacaataatttcacacaagtggttcatcgtttccccatgctt
tcgcttcagaacacctactctgagggggaagtgactgatttttacaatcgtgtcaagagg
acactgaacgaagagttcgagatagtgtgtgagctcaagttcgacgggacttctatctct
ttggtctatgagaacgggcggctgacacgggcggtgacccgtggtgacggacggaaagga
gatgatgtgaccgccaatgcgcggaccatccgcaatataccgttggtgttgaaaggtgat
gatgtccccccttatattgaggtgcggggggagatattgatgccgtggagttcttttgat
gcactgaacaaagagcgggctgaacaggaagaacccctgtttgccaatccgcgcaatgcc
gcttcgggtaccctgaaaatgcaggattcccgggtggtggcttcccgtaagctggaatcc
tatatctattcaatgttgggtgattccctcccgtcccgcagccattttgagaatatgacc
ctggctcgcggatgggggttgaacgtgtcagacaccatgaggaaatgcgggaccctggag
gagatctttgcttatctgaaagagtgggatgttgctcgaaagacgcttccggtgattacc
gacggagttgtgctgaaggtggattccttgacacagcaacgcaatttaggggctacctcc
aaatttccccgatggtctatcgcttttaaattcagcgccgaacaggcggttacacgcctg
gaatcggtttcctaccaggtgggacggacaggtgccgttactcccgttgccaatctggag
ccggtgttgttgtctggtaccaccgtgaaaagggcttctctttacaatgaagatgcgatt
cttgcacttgacctgcatatcggtgacagggtctatgtggagaaggggggggagatcatt
cccaagattaccggtgtagataaggaagcccgtttcttgttgggtgacagggtcactttc
acccgcaaatgccctgattgcggaacccctttggtgcgcaatgaggacgaggccgcctat
tactgtcccaacagcgagggatgtcccacgcagataaaagggcgtatcgaacactttgtc
acccgtaaagccatggatatcaccataggtccggagactatcaatctgctctatgagaaa
gggctgatcagtgacgctgccgatctttaccggttgcggttcgaagaccttgtctatttg
gagcgttggggacaaacaagcgccaataatctgctggaaagtatagaaagatcgaaatca
gtatcctatgagcgggttctgtatgccctgggcatccgcttcgtgggcgagaccgtagcg
cggaaactggcacaggcatttccggatatcgatcagttggcccaggcgactgtggagcaa
ctggtcgctgtggatgaaatcggcgagcggatcgcgcgaagtgtgaccgcttactttgcc
aacaccctctgtgtggatttcgtacggaggttgcggcagtacggtttacagtttgcgttg
agccaagagatgctggctgcaaagaccgataaattgaaaggattatctatcgtcatcagt
ggtacattcgaactccattcgcgggatgagtacaaggctatgatcctgcaaaacggggga
aagaacagcgggtcagtttcgaaaaataccgactacattcttgccggagagaatatgggg
ccggccaaattagaaaaagcgggaaaattaggtgtgaaaattattgacgaaaaggctttt
ctggagatgttgcaataa
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