Candidatus Phytoplasma sacchari: O7R10_00620
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Entry
O7R10_00620 CDS
T09130
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psah
Candidatus Phytoplasma sacchari
Pathway
psah03030
DNA replication
psah03410
Base excision repair
psah03420
Nucleotide excision repair
psah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O7R10_00620 (ligA)
03410 Base excision repair
O7R10_00620 (ligA)
03420 Nucleotide excision repair
O7R10_00620 (ligA)
03430 Mismatch repair
O7R10_00620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psah03032
]
O7R10_00620 (ligA)
03400 DNA repair and recombination proteins [BR:
psah03400
]
O7R10_00620 (ligA)
Enzymes [BR:
psah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O7R10_00620 (ligA)
DNA replication proteins [BR:
psah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O7R10_00620 (ligA)
DNA repair and recombination proteins [BR:
psah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O7R10_00620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O7R10_00620 (ligA)
MMR (mismatch excision repair)
DNA ligase
O7R10_00620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O7R10_00620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
WBL31553
LinkDB
All DBs
Position
148887..150899
Genome browser
AA seq
670 aa
AA seq
DB search
MTLEIKKKIKKVTDILEKANYFYYQLNNSYLKDEQYDALLKELIYLEKKYPEYKLSYSPT
FKVGGYLNKKFDKIKHDVPMLSLGNVFNITELKKFYNRIKKKHKNANFITELKIDGVAIS
IKYKKGILYQAVTRGNGYFGELITNNIKTIRDIPLKIIEKIDLEVRGEIFFNFDTFKKIN
EIRKKENKIVFANPRNAASGTLRQLDTNIVAKRNLSCFIYSIINPPSFIQTQKDVLFFLH
KLGFVINHHYKIINSFDELIEQINYYKELKKNLNYNNDGIVVKVNELYFYDSIGYTSKFP
KWAIAYKFNSIHEKTTIKKITFQIGRTGAVTPIAELIPVIVDGSLISKVSLHNFNYIEEK
DIRINDYVLIHKSGSIIPEIIKIIKEKRTNQFPLKMISNCPFCFHKLQKIENEVDYFCIN
ENCEERKIKNIIHFVSKEAMDINVLGNKTLELFFKKKIIKNRSDLYDLEKNRDKLEKLPF
FKQKKIDSILQSIEKSKKRPFKNVLFSLGIKHVGLKISKILAKKFQNIENIKKASIENIL
EIQEIGLKIANSILEYFKDEKNLKELEILKEKGIMNLSKKNDIELEKKEKNKKYYFFRNK
KIVLTGVFNNFKRIEIKNILEEYEAIVTSSISKKTDFLICGKQGSLNKLKKADELKIKII
NEKNFMKILF
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacgttagaaataaaaaaaaaaattaaaaaagttacagatatcttggaaaaagctaat
tatttttattatcaattaaataattcttatttgaaagatgaacaatatgatgctttattg
aaggaattaatttatttagaaaaaaaatatccagaatacaaattatcttatagtcctact
tttaaagtaggaggatatttaaataaaaaatttgacaaaataaaacatgatgttccaatg
ttatcattaggaaatgtttttaatataacagaattaaaaaaattttataatcgcattaaa
aaaaaacataaaaatgcaaattttataacagaactaaaaatagatggagtagctattagt
ataaaatataaaaaaggaattttatatcaagcagtaacaagaggtaacggttattttgga
gaattgataactaataatataaaaactattagagatattcctttaaaaatcatagaaaaa
atagacttagaagttagaggagaaattttttttaattttgatacatttaaaaaaataaat
gaaataagaaaaaaagaaaataaaattgtttttgctaatcctcgtaatgcagcttctgga
actttaagacaattagatactaatatagtagctaaaagaaacttatcttgttttatttat
tctataattaatcctccatcctttattcaaacacaaaaagatgttttgttttttttgcat
aaattaggttttgtcataaatcatcattataaaataataaattcttttgatgaattaata
gaacaaattaattattataaagaattaaaaaaaaatctaaattataataatgatggtata
gttgtgaaagttaatgaattatatttttatgattctataggttatacaagtaaatttcct
aaatgggctattgcttataaatttaattctattcatgaaaaaactactataaaaaaaatt
acttttcaaataggaagaacaggagctgtcactcctatagcggaattgattcctgttatt
gtagatggtagtcttatttcaaaagtatctttacataattttaactatatagaagaaaaa
gatattagaataaatgattatgttttaatacacaaatctggatcaattattcctgaaatt
ataaaaataattaaagaaaaaagaacaaatcaatttcctttaaaaatgatttctaattgt
cctttttgttttcataaattgcaaaaaatagaaaatgaagtggattatttttgtataaat
gaaaattgcgaagaaagaaaaataaaaaatataattcattttgtttctaaagaagctatg
gatattaatgttttaggaaataaaactttagaacttttttttaaaaaaaaaataataaaa
aatagatcagatttatatgatttagaaaaaaatagagataaattggaaaaattacctttt
tttaaacaaaaaaaaatagatagtattttacaatctatagaaaaaagtaaaaaaagacct
tttaagaatgttttgttttcattaggcataaaacatgtaggtttaaaaatatctaaaata
ttagctaaaaaatttcaaaatattgaaaatataaaaaaagctagtatagaaaatatatta
gaaatccaagaaataggtttaaaaatagctaatagtatattagaatattttaaagatgaa
aaaaatttgaaagaattagaaatattaaaagaaaaaggtattatgaatctttcaaaaaaa
aatgatattgaattagaaaaaaaagaaaaaaataaaaaatattatttttttagaaacaaa
aaaatagttttaacaggtgtttttaataatttcaaaagaatagaaataaaaaatatttta
gaagaatatgaagctattgttactagttctatttctaaaaaaactgattttttaatttgt
ggcaaacaaggaagtttaaataaacttaaaaaagctgatgaattgaaaataaaaataata
aatgaaaaaaattttatgaaaatacttttttga
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