Pseudomonas salmasensis: HU731_008000
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Entry
HU731_008000 CDS
T07619
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psam
Pseudomonas salmasensis
Pathway
psam03030
DNA replication
psam03410
Base excision repair
psam03420
Nucleotide excision repair
psam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU731_008000 (ligA)
03410 Base excision repair
HU731_008000 (ligA)
03420 Nucleotide excision repair
HU731_008000 (ligA)
03430 Mismatch repair
HU731_008000 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psam03032
]
HU731_008000 (ligA)
03400 DNA repair and recombination proteins [BR:
psam03400
]
HU731_008000 (ligA)
Enzymes [BR:
psam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU731_008000 (ligA)
DNA replication proteins [BR:
psam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU731_008000 (ligA)
DNA repair and recombination proteins [BR:
psam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU731_008000 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU731_008000 (ligA)
MMR (mismatch excision repair)
DNA ligase
HU731_008000 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU731_008000 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
5_3_exonuc
Nlig-Ia
Tla3_C
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QXH79731
LinkDB
All DBs
Position
complement(1832604..1834970)
Genome browser
AA seq
788 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTRDSPTQ
RVGSAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGAGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTA
DISDTHIGNLKQLQQWGMPISHELKLAKGIQECLDYYRDIGERRNALGYEIDGVVFKVNS
IAYQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVTERRPENARAVQIPQNCPVCGS
HVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQ
LVDEQLIGSPADLYKLKYEQIIDLEGFADISSKKLISAIENSKTPTLARFIYALGIPDVG
EETAKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDGHNQQVIGALLSPDE
CGLQLQEQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFGSLEGVIKADWLDMR
QALPEKQAKAVREFFDNADNANHALAIEQQLKDFGMHWQSEKKLVEGLPEAGHTWVLTGS
LELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVAF
LAKHNITV
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccatacccgcattctcgaactgcgcgctgaactggatcagcacaactac
cgctaccacgtcctcgacgagccgagcatcccggacgccgagtacgaccgcctgttccac
gagctcaaggccctggaggccgagcacccggagctggtgacgcgtgattcgccgacgcag
cgggtcggcagtgcggcgctgtcggcgttcacccaggtcaagcacgagatcccgatgctc
agcctgggcaacgccttcgatgaaaccaccatgctggagtttgatcgccgggtcaccgag
ggccttgatctgccggtgggcgatctgtttggcgctggcgcggcggtggaatacagctgc
gagccgaagctggacggcctggcggtcagcctgctgtaccaggatggcgagttggtgcgc
ggtgccacccggggtgacggcaccaccggcgaggacatcagcgtcaatgtgcgcacggtg
cgcaatatccctctgaaactgcacggcacaggctggccggccaccctggaagtgcgcggt
gaagtgttcatgtccaaggccggtttcgagcgattgaacgcctcgcaactggaagtgggc
ggcaagaccttcgccaacccgcgcaacgccgcagcaggcagcctgcgccaactggattcg
aagatcaccgccagtcgcccgctggaattctgctgctatggcatcggccaagtgaccgcg
gatatcagcgacacccacatcggcaacctcaagcagttgcagcagtggggcatgccgatc
agccacgaattgaagctggccaagggcatccaggagtgcctggactactaccgcgacatc
ggcgagcgccgcaatgcgctgggctatgaaatcgacggcgtggtgttcaaggtcaacagc
attgcctaccagcgtgaactgggcttccgtgcccgcgagccgcgctgggcgatcgcgcac
aaattcccggccatggaagaactcaccgagctgctcgacgtggagttccaggtcggtcgt
accggtgcggtcacgccggtggcgcgcctcaagccggtcaaggtggccggtgtgaccgtg
tccaatgccaccctgcacaacatggacgaagtggcacgcttggggctgatgatcggcgac
accgtgatcatccgccgcgccggtgatgtgattccgcaggtggtctcggtggtcaccgaa
cgccgcccggaaaacgcccgcgccgtgcagatcccgcaaaattgcccggtgtgcggttcc
catgtggagcgcacgcagttggtcaagcgcagcaaaggcaaggaaaccgtcagcgaaggc
gcggtgtaccgttgtgtcgggcgcctggcctgcggtgcgcagctcaagcaggcgatcatt
cattttgtctcgcgccgtgccatggacatcgatggcctgggcgacaagaccatcgagcaa
ctggtggatgaacagctcatcggttcgccggccgacctctacaagctcaagtacgaacag
atcatcgacctggaaggctttgccgatatctccagcaagaagctgatcagcgccatcgaa
aacagcaagaccccaaccctggcacgctttatctacgccttgggcattcccgatgtgggc
gaggagacggccaaggttttggcgcgctcgctggcgtccctggagcgtgtacaaaaggcg
ttgccagaggtgctgacgtacttgccggatgtggggctggaagtggcccatgagatccat
agcttctttgaggacggccataaccagcaggtgattggcgcgctgttgtcgccggacgaa
tgcggcctgcaattgcaggagcaaggcgaactcagcgccgaattcgccgccagcaccacc
ttgggcggtttgctcgacaagctgcacgtgccgtcggtggggccaggcgcggcgcagaag
ctcgcggacaagttcggttcgctggaaggcgtcatcaaggctgactggctcgatatgcgc
caggcgctgcccgagaagcaagccaaggctgtacgggagtttttcgacaacgccgacaac
gccaaccatgccctggccatcgagcaacagctcaaggacttcggcatgcactggcagagc
gagaaaaagctcgtcgaaggtttacctgaagccgggcacacctgggtactcaccggctcc
ctggagctgatgagccgcgatgtggccaaggacaagctcgaaagcctgggggccaaggtg
gccggttccgtttcggcgaaaacccactgcgtggtggccgggccgggcgccggctcgaaa
ctggccaaggccaatgagctgggcctgaaagtactggacgaggaggccttcgtcgccttc
ctggccaagcacaacatcaccgtctga
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