Paracoccus saliphilus: JHX88_06060
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Entry
JHX88_06060 CDS
T08849
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psap
Paracoccus saliphilus
Pathway
psap03030
DNA replication
psap03410
Base excision repair
psap03420
Nucleotide excision repair
psap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JHX88_06060 (ligA)
03410 Base excision repair
JHX88_06060 (ligA)
03420 Nucleotide excision repair
JHX88_06060 (ligA)
03430 Mismatch repair
JHX88_06060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psap03032
]
JHX88_06060 (ligA)
03400 DNA repair and recombination proteins [BR:
psap03400
]
JHX88_06060 (ligA)
Enzymes [BR:
psap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JHX88_06060 (ligA)
DNA replication proteins [BR:
psap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JHX88_06060 (ligA)
DNA repair and recombination proteins [BR:
psap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JHX88_06060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JHX88_06060 (ligA)
MMR (mismatch excision repair)
DNA ligase
JHX88_06060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JHX88_06060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
WCR05187
LinkDB
All DBs
Position
1290916..1293111
Genome browser
AA seq
731 aa
AA seq
DB search
MAERQLDDEAPGGGAVQVSELTAQQAADEIANLSARLTQANEDYHGRDKPQISDADYDAL
KLRLSALEEAFPDLRAADSPTGKVGAAPAEGFGKVTHSQRMMSLGNAFNEEDVQDFVTRI
RSFLNLPEDAPLAFTAEPKIDGLSLSLRYEDGELVQAATRGDGTVGENVTANARTIADIP
QKLKADAPGIVEIRGEVYMSHDDFARLNAGDTGRVFANPRNAAAGSLRQLDPKITASRPL
KFFAYSWGELTAPLAETQMGAVERLAELGFTTNPLTRLCHDAAGMIAVWAEIEQQRATLG
YDIDGVVYKVNDLGYQARLGFRSTTPRWAIAHKFPAETAWTRLDRIEIQVGRTGALSPVA
RLEPVTVGGVVVSNATLHNEDYIAGRDNAGNLIREGRDIREGDWVKVYRAGDVIPKIADV
DLSRRISDMPYQFPTHCPECGSEAIREPGDSVRRCSGGLICPAQAIEKLKHFVSRSAFDI
EGLGAKQIEMFFADDALPIREPADIFTLAERDAANLPKLRNRDGFGARSTEKLFAAIEEK
RRIPLARFLFALGIRHLGEVAGTTLARHFGTWEALIATIDGAAAEPAFTAEDDKARRAVL
EDSPNWAELTGIDGIGAVLVQSLVTTFTQPRERESIDRLTSMLTILPAETPASAQTEISG
KTLVFTGTLERMTRAEAKARAEAMGAKVAGSVSAKTDLLIAGPGAGSKAKKAADLGVGII
DEDEWMRIAGQ
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacgacagttggatgatgaggctccgggcggcggcgcggtgcaggtaagcgag
ttgacggcgcagcaggccgctgacgagatcgccaatctttcggcacgcctcacgcaggcg
aacgaggattaccacggcagggacaagccgcagatctccgatgcggattacgacgcgctg
aaactccgcctctcggcgctggaggaagcctttcccgatctgcgcgctgccgacagcccg
actggcaaggtaggcgccgccccggccgagggtttcggcaaggtcacccattcgcaacgg
atgatgtctctgggaaatgccttcaatgaagaggatgtgcaggatttcgtgacccgaatc
cgcagcttcctgaacctgcctgaggatgcgccactggcgttcaccgccgagcccaagatc
gacgggctgtcgctgtcgctacgctacgaggatggcgaattggtgcaggcggccacgcgc
ggcgacggcacggtcggcgagaatgtcaccgccaatgcccgcaccatcgccgatattccc
cagaagctgaaggccgacgctcccggcatcgtcgagatccggggcgaagtttacatgtcg
catgacgatttcgcccgcctcaatgccggggatacggggcgcgtctttgccaatccacgc
aatgccgccgcaggctcgctgcgccaacttgatcccaagatcaccgccagccgcccgctg
aaattttttgcctatagctggggcgaactgaccgcgccgctggccgaaacccagatgggc
gcggtcgaacggctggccgagttgggtttcacgaccaatccgctcacccggctctgccac
gacgctgccgggatgatcgcggtctgggccgagatcgaacagcagcgcgccacgcttggc
tatgacatcgacggggtggtctacaaggtcaatgacctgggctaccaggcccggctcggc
ttccgctcgaccacgccgcgttgggcgatcgcgcataaattccccgccgagaccgcctgg
acccgccttgaccggatcgagatccaggttggccgcaccggcgccctgtccccggtcgcg
cggctggagccggtgacggtgggcggggtcgtcgtctcgaacgcgacgctgcataacgag
gattacattgccggtcgcgacaatgccggcaacctgatccgtgagggccgcgatatccgc
gagggcgattgggtcaaggtctaccgcgcgggcgacgtgattcccaagatcgccgatgtg
gacctttcgcggcgcatcagcgacatgccctaccagttcccgacacattgccccgaatgc
ggctcggaggcgatccgcgaaccgggcgattccgtgcgccgctgttcgggcggcctgata
tgcccggcgcaggccatcgagaaactgaagcatttcgtcagtcgctcggccttcgatatc
gaggggctgggggcaaagcagatcgagatgttctttgccgatgacgccctgccgatccgc
gagcccgccgatatcttcaccctggccgagcgcgacgcggcgaacctgcccaagctgagg
aaccgcgacggtttcggcgcgcgatccaccgagaaactcttcgccgcgatcgaggaaaag
cgacgtatccccttggcgcgtttcctttttgccctgggcatccggcatctgggcgaagtg
gcggggacgaccctggcccggcatttcggcacatgggaggcgctgatcgccaccatcgac
ggcgcagcggcagaacccgccttcaccgccgaggacgacaaggcccgccgcgccgtgctg
gaagacagccccaactgggccgagttgaccggcatcgacgggatcggcgcggtgctggtg
caatcgctggtcaccaccttcacgcaaccgcgcgagcgtgaaagcatcgaccgcttgacc
tcgatgctgaccatcctgcctgccgaaaccccggcatccgcgcaaaccgagatcagtggc
aagacgctggtcttcacaggcacgttggagcgcatgacccgcgccgaggccaaggcgcgg
gccgaggcgatgggggccaaggtcgcgggctcggtcagtgccaagaccgatctgctgatc
gccgggcccggcgcgggatcaaaggccaagaaggccgccgacctgggcgtgggtatcatc
gacgaggatgaatggatgcggatcgccgggcaatga
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