Lathyrus oleraceus (garden pea): 127073452
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Entry
127073452 CDS
T08598
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127073452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psat03041
]
127073452
Spliceosome [BR:
psat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127073452
Complex C
U5 SnRNP specific factors
127073452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
EF-G_D2
Roc
SRPRB
Motif
Other DBs
NCBI-GeneID:
127073452
NCBI-ProteinID:
XP_050870561
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All DBs
Position
4:70635926..70641991
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AA seq
988 aa
AA seq
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MDDSLYDEFGNYIGPEIESDQDSDREEDDDRDEPEESDRAAESDGEGPSNGWLTTGASTD
VDMLENQVVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNKKFEVGVKDS
STYVSSQFMLGLMSNPSLARNVALVGHLQHGKTVFMDMLVEQTHHMSTFDSQSEKHVRYT
DTRVDEQERKISIKAVPMSLVLEDSNSKSYLCNIMDAPGHVNFSDEMTAALRLADGAVLV
VDAGEGVMVNTERAIRHAIQERLPIVVVMNKVDRLITELKLPPKDAYHKLRHTLEVINNH
ISAASSVAGDVQVIDPVAGNVCFASGTAGWSFTLQSFAKLYGKLHGVPLEANKFASRLWG
DYYYHPDTRTFKKKPPVGGGERSFVEFVLEPLYKIYSQVIGEHKKSVETTLAELGVTLSN
AAYRLNVRPLLRLACSSVFGSASGFTDMLVQHIPSPRDAAVRKVDHIYTGPKDSSIYKAM
TQCDSSGPLMVNITKLYPKSDCSVFDAFGRVYSGKIQTGQAVRVLGEGYSPDDEEDMTVK
EVTKLWVYQARDRMPIAEALPGSWVLIEGVDASIMKTATLCNVDFDEDVYIFRPLLFNTL
SVVKTATEPLNPSELPKMVEGLRKISKSYPLAVTKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVV
STDWNRKKLGEFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYLVKAFLPVIESFGFET
DLRYHTQGQAFCQSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSIGKFFDEAMMVELAQQAADLHQQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagcttatacgacgagttcggtaactacatcggacccgaaatcgagtccgac
caagattccgacagggaggaagacgacgaccgcgacgaacccgaagaatccgacagagcc
gccgaatccgacggcgaaggtccttcaaacggatggctgacaaccggcgcctccaccgac
gtagacatgctcgaaaatcaagtagtcttagctgaggacaaaaagtactacccaaccgcc
gaagaagtttacggcgaagatgttgaaaccctagttatggacgaagatgagcagccacta
gaacaaccaattattaagccagttaagaacaagaaattcgaagtaggtgttaaggattct
tcaacttacgtttcgtcgcagtttatgttagggttaatgtcaaatccttctttggcgaga
aatgtggcgttggtgggtcatttgcaacatgggaagacggttttcatggatatgcttgtg
gagcagactcatcatatgtcaacttttgattctcagagtgagaagcatgtgaggtatact
gatacgagggttgatgaacaagagaggaagatatctattaaagctgttcctatgtcgctt
gtgttggaagatagtaattcaaagtcttatttgtgtaatattatggatgcgcctgggcat
gttaacttttcggatgaaatgactgctgcattgaggcttgctgatggtgctgttttggtt
gttgatgctggtgaaggtgttatggtaaacacagagagggcaatacgtcatgcaattcag
gagcgattgcctattgttgttgtaatgaataaggttgacaggctcataactgaacttaaa
ctacctccaaaagatgcttaccataaattgaggcatactttggaagtcattaataaccac
atatctgctgcctcctcagttgctggtgatgtccaagttatagatccagttgcaggaaat
gtttgtttcgcaagtggcactgctggatggtcatttacgctgcagtcatttgctaaactg
tatgggaagctacacggagttcccttggaagctaataaatttgcttctcgcctttggggt
gactactattatcatcccgataccagaacattcaaaaagaaaccccctgtgggtggtgga
gaacgatcttttgttgagtttgtgttggagccactttacaagatatatagccaagtgatt
ggggaacataaaaagagtgtggagacaacccttgccgaacttggtgttacccttagtaat
gctgcctatagattgaatgttagacctttactaaggctggcttgtagctctgtttttggt
tcagcttcaggtttcactgatatgcttgttcaacacataccttcaccaagagatgctgct
gttaggaaagttgatcatatatatactggacctaaagactcatccatttacaaagccatg
acacaatgtgattcttctggcccactgatggttaatataaccaagttgtatccaaaatct
gattgtagtgtgtttgatgcttttggtagagtttatagcggcaagatacagacaggacag
gctgtccgtgttctcggagagggatactcgccagatgatgaggaggacatgactgtaaaa
gaagtaacgaagttgtgggtttatcaagctcgcgacaggatgccaatagccgaggctctt
ccaggttcttgggttttaattgaaggtgtggatgcttcaataatgaaaaccgcaactctt
tgtaatgtggattttgatgaggatgtgtacatattcaggccccttctgttcaataccctg
tcagtggtaaaaacagccactgagccattaaatccaagcgagttgccaaaaatggtggag
ggtctaaggaaaattagcaagagttatcctttagcagttactaaagttgaggagtctggg
gaacacactatattaggcactggtgagctgtacttggattcaattatgaaggacctgaga
gagctatattctgaagtagaagtcaaggtagcagatcctgttgtctcattttgtgaaaca
gttgtcgagtcttcatcaatgaaatgttttgctgaaacaccaaacaagaagaataaaata
acaatgattgccgagccactagaaagaggtttggcagaagacatagagaatggtgttgtt
agcactgactggaacagaaagaaactaggtgaatttttccagactaaatatgactgggat
cttcttgctgctcggtcaatctgggcatttggccctgataagcagggccctaatattctt
ttagatgatacccttcctactgaagttgacaagaacctcctcaatgctgtaaaggattcc
attgttcagggatttcagtggggtgcacgggaaggacctttgtgtgatgaacccattaga
aatgttaaatttaagattgttgatgcaaggattgcccctgagccacttcatcgtggatct
ggccagatcattccaacagcacggcgagtggcttattcagctttccttatggccaccccc
cgccttatggaaccagtatattacgtagagattcaaacaccaatagattgtgtgtctgca
atctacaccgtgttgtctcgtaggcgtggacatgttactgcggatgttcctcaaccaggc
accccggcttatcttgttaaggcatttttgcccgtgatagaatcttttggttttgagaca
gacttgagataccatacacaaggtcaagcgttttgccaatcagtttttgatcactgggct
attgttccaggagatcctctggacaaaagcattgttttgcgcccacttgaaccagcacca
atccagcatcttgcccgcgagtttatggtaaaaacaaggcgcaggaagggaatgagtgaa
gatgtaagtataggtaagttctttgatgaggctatgatggtggaacttgcacagcaggcg
gcagatcttcatcaacaaatgatatga
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