Pseudomonas syringae pv. syringae B728a: Psyr_4107
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Entry
Psyr_4107 CDS
T00246
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb00300
Lysine biosynthesis
psb00550
Peptidoglycan biosynthesis
psb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Psyr_4107
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Psyr_4107
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
psb01011
]
Psyr_4107
Enzymes [BR:
psb01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
Psyr_4107
Peptidoglycan biosynthesis and degradation proteins [BR:
psb01011
]
Precursor biosynthesis
Amino acid ligase
Psyr_4107
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
CBP_BcsQ
Motif
Other DBs
NCBI-ProteinID:
AAY39137
UniProt:
Q4ZNY5
LinkDB
All DBs
Position
complement(4896998..4898461)
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AA seq
487 aa
AA seq
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MAFNLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVA
YEVAGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVA
QALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHG
LDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRVINLDDDFGRE
LAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNV
LAAVGALLGLDYALDEILKALPKLEGPVGRMQRLGGADKPLVVVDYAHTPDALEKVLEAL
RPHAKGRLLCLFGCGGDRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSIFDDIRPGF
VAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEINGQRQPFSDLQEAASALA
VWEPANA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcctttaatctgagcaagattttcgctcacaccgaccgcgatgcgctgattcgcgag
ttgaccctcgacagccgcaatgtgcgcccgggcgacctgtttctggcagtgccgggcatc
aaggtcgatggccgcgcgcatatcgccgacgcgctcaagcgtggcgcagctgctgtagcc
tatgaagtcgcagggtcgaccgtgctgccgatcaccgacgtgccgctgatcccggtcaag
gggctcgccgggcagttgtccgccatcgccggtcgcttctatggcgatccgagccgcagt
ctgaatctggtcggtgttaccggcaccaacggcaagaccagcgtgacccaactggtggcc
caggcgcttgatgtcctcggccaacgttgcgggatcgtcggtaccttgggcaccggtttc
tacggctcgctgcaaagcggtcgccacaccacgcccgacccgattgccgtgcaggcgacg
ctgaccgacctgagaaaggccggtgcgcgcgcagtggcgatggaagtctcgtcccacggt
cttgatcagggacgcgctacggcgctggcctttgatgtggcggtgctgactaatctgtcc
cgtgaccatctggattatcacggcaccatggaggcctacgctgccgccaaggcgaagctg
ttcgcatggtccgatctgaaatgccgggtgatcaacctggatgacgacttcggtcgtgaa
ctggccgcggtcaaacaagagtcgcggttgatcacctacagccagctggacagttcggcc
tacctgtattgccgcgatgcgaagttcgatgacgatggcgtgcgtgccacgctggtcacg
ccgcagggcgagcatttcctgcgcagcagcctgctgggtcgtttcaatctgagcaatgtg
ctggctgcggtcggcgcgctgctgggcctggattacgcgctggacgaaattctcaaggcg
ctgccgaaactcgaaggcccggtcggacgcatgcagcgtctgggtggtgccgacaagcct
ctggtggtcgtggattacgcgcacaccccggacgcgctggaaaaagtactcgaagcactg
cgcccgcacgccaagggccgcttgttgtgcctgttcggctgcggcggtgatcgtgaccgt
ggcaagcgtccgttgatggctggagtggtcgagcgtctggccgacggcgtatgggtcact
gatgacaatccgcgctccgaatcgcctgtcagtatttttgacgatatacgccctggcttc
gttgctgcggacaaggtgcgtttcatcgaaggtcgcggtcaggccattgccgagctgatt
gccagcgccaatgctgatgacgtggtggtgcttgctggcaagggccacgaggactaccag
gaaatcaacggtcagcggcagccgttctccgatttgcaagaagccgccagtgcgcttgcc
gtatgggagcctgcgaatgcttaa
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