Stutzerimonas stutzeri CCUG 29243: A458_01645
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Entry
A458_01645 CDS
T02168
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psc
Stutzerimonas stutzeri CCUG 29243
Pathway
psc03030
DNA replication
psc03410
Base excision repair
psc03420
Nucleotide excision repair
psc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A458_01645 (ligB)
03410 Base excision repair
A458_01645 (ligB)
03420 Nucleotide excision repair
A458_01645 (ligB)
03430 Mismatch repair
A458_01645 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psc03032
]
A458_01645 (ligB)
03400 DNA repair and recombination proteins [BR:
psc03400
]
A458_01645 (ligB)
Enzymes [BR:
psc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A458_01645 (ligB)
DNA replication proteins [BR:
psc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A458_01645 (ligB)
DNA repair and recombination proteins [BR:
psc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A458_01645 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A458_01645 (ligB)
MMR (mismatch excision repair)
DNA ligase
A458_01645 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A458_01645 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH_5
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFM31587
UniProt:
I4CND0
LinkDB
All DBs
Position
complement(350427..352091)
Genome browser
AA seq
554 aa
AA seq
DB search
MQRLIALLLCLFSPLCLAVCPTWNDARAQQEITSLQRQLQHWDEAYHRRGLALVDDEIYD
QSRARLHDWQRCFPSTVAAQTPLAGAGGPVRHPVMQTGLAKLADEQAVAAWIERREDLWI
QPKVDGVAVTLVYRGGLLQQAISRGDGHSGQDWTAHVRQLPAVPSRLAAPGEVILQGELY
WRLEQHVQAERGSAGARGRVAGAMASNRLDTDTAAQIGLFVWDWPNGPEQMTLRLQRLAA
MGFSDSQRFSLPLQGPAQAQHWREQWYRQPLPFATDGVVMRQGTRPPAERWQAEPHWAAA
WKHPLRKGVTEVRAVEFRIGRTGRITPMLQLAPVHLDDRRIRTLSLGSLERWRELDVRPR
DQVAIALAGHSIPQLDSMVWRSTERAEVAAPDPSQYHAHSCWQPAPGCEQQFIARMVWLS
GKQGLGLPGVGQGSWQALLDAGLLPDLLAWLELDAATLQQVPGIGKARASKLVASFALAR
QKPAGRWLKALGMPVNLPLTLQPDWDVLAARSVAQWQAEPGVGKARAEQLHTFFHAPELQ
LLRHRLRAVGISGF
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgcctgatcgcactgttattgtgccttttctcgccgctttgcctcgccgtctgc
ccgacctggaacgatgcgcgagcgcaacaggaaatcaccagcctccaacgacagctgcaa
cactgggacgaggcctatcaccgccgcggcctggcgctggtggatgacgaaatctacgac
cagagtcgtgcgcgcctgcacgactggcagcgttgtttcccgagcaccgtcgcggctcag
accccgttggccggcgccggcggtccggtacggcatccggtaatgcagaccgggctggcc
aagctcgccgacgagcaggcggttgccgcctggatcgagcgccgcgaggacctgtggatt
cagccgaaggtggacggcgtagcggtcaccctggtctatcgtggcggcctgctgcagcag
gccatcagccgcggcgatggtcacagcggacaggactggacagcccacgtccggcagctg
ccggcggttccgtcccgtcttgcagcgcctggcgaggtgatactgcagggcgaactctac
tggcgtctggagcaacatgtgcaggcggagcgtggcagcgctggcgcgcgcggccgtgtt
gccggcgccatggccagcaaccggctggacaccgatacggcggcgcagatcggccttttc
gtctgggactggccgaacgggccggagcagatgaccctccgtctgcagcggctggccgcc
atggggttcagcgacagtcagcggttcagtctgccgctacagggtcccgcgcaagcgcag
cattggcgcgaacagtggtatcggcaaccgctgccgttcgccaccgacggcgtggtgatg
cggcaaggcacgcgcccgcctgccgagcgctggcaggcagagccgcactgggcggcggcc
tggaaacatccgctgcgcaagggggtgaccgaggtccgcgccgtggagtttcgcatcggt
cgcaccgggcgcatcacgcccatgctgcagctggcaccggtacatctcgatgatcgccgt
atccgtacgctcagcctcggctcgctggagcgctggcgcgaactggatgtgcgcccccgc
gaccaggtcgcaattgcgctcgccgggcatagcatcccgcaactggactcgatggtctgg
cgcagcaccgaacgggcagaggtcgcggcaccagacccatcgcagtatcacgcgcacagc
tgctggcagccagcaccgggctgtgagcagcagttcatcgcccgtatggtctggctgagc
ggcaagcaggggcttggccttcccggggtaggccaaggcagttggcaggccctgctggac
gccggactgctgcccgatctgctcgcctggctggagctggacgcggcgacgttgcaacag
gtccctggcatcggcaaggcgcgcgccagcaagctggtcgcgagcttcgctctcgcccga
cagaagccagcgggccgatggctcaaggcgctcggcatgccggtcaacctgccgctcaca
ctgcagcccgactgggacgtactggcggcacgcagcgtggcgcaatggcaggcggaaccg
ggggttggcaaggcacgcgcggaacagctgcataccttctttcatgcaccggagctgcag
ctgctgcgtcacaggctgcgcgctgtcggtatttcggggttctga
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integrated database retrieval system
