Pseudoxanthomonas spadix: DSC_07880
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Entry
DSC_07880 CDS
T01643
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03030
DNA replication
psd03410
Base excision repair
psd03420
Nucleotide excision repair
psd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSC_07880 (ligA)
03410 Base excision repair
DSC_07880 (ligA)
03420 Nucleotide excision repair
DSC_07880 (ligA)
03430 Mismatch repair
DSC_07880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psd03032
]
DSC_07880 (ligA)
03400 DNA repair and recombination proteins [BR:
psd03400
]
DSC_07880 (ligA)
Enzymes [BR:
psd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSC_07880 (ligA)
DNA replication proteins [BR:
psd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSC_07880 (ligA)
DNA repair and recombination proteins [BR:
psd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSC_07880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSC_07880 (ligA)
MMR (mismatch excision repair)
DNA ligase
DSC_07880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSC_07880 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
DUF2116
Bep_C_terminal
SlpA_N
Motif
Other DBs
NCBI-ProteinID:
AER56227
UniProt:
G7UTX4
LinkDB
All DBs
Position
1515305..1517791
Genome browser
AA seq
828 aa
AA seq
DB search
MTKTPDPAARIAALRQQLDEASYRYYVLDAPTIPDAEYDRLLRELEQLEAAHPQLVSPDS
PTQRVGAPAGSHFAQVRHAIPMLSLGNAFDDAEVLDFVRRIGDRLGRERLIFSAEPKLDG
LAVSLRYEHGRFVQGATRGDGFTGEDVTANLRTVKAIPLKLRGSGWPDVLEVRGEVYMPR
AAFEAYNQQARLHGGKVLANPRNGAAGSLRQLDARITAQRPLAFFAYGVGQVEGGALPDR
HSQVLRQLRQWGLPVSDLTKVVEGAEGLLAYYRQIGARRDTLPFDIDGVVYKLDDVQGQR
EMGFVSRAPRWALAHKYPAQEQSTTVEAIQIQIGRSGAATPVARLAPVQVAGVTVTNATL
HNADQIKRLDVRVGDAVIVRRAGDVIPEVVGVILERRPKGTTPWQMPRHCPVCGSDIVRE
EGAAVWRCSGELSCPAQRKEAIGHFVSRRAMDVDGLGEKFIEVLVDAGVVQGVADLYRLD
LDLLLQLRLVTSAQTPEGFLRAAREHLASGAYSTLEATVARICGKAGAVPDTWQAELLRA
GLPAFDWNRKKIASKWAQNLIAALDKSKHTTLERFLFALGIEHVGESTAKALAAWFGDLA
LIRTLPWPLFKRVPDIGGEVARALGSFFAQAGNQQAIDALLQRGVVIGDTHPPSALLRQG
LDLATLLVDLEIPRLTRIRAESLVKALPEVDDILQAGPEALVGAGLPQDTAAALIQWLRE
DDHAQLLQAAGAALKQLDAITPQQATGQAGPLSGQTVVLTGSLEAMTREQAGAKLEALGA
KVTGSVSKKTSFVVAGAEAGSKLTKARELGIEVWDEARLLEFLAGQRA
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagacccctgatcctgctgcgcgcatcgccgcgctgcgccagcagctggacgag
gccagctatcgctactacgtgctggacgcgcccaccatccccgatgccgaatacgaccgg
ctgctgcgtgagctggagcaactggaagcggcgcatccgcaactggtgagccccgactcg
ccgacccagcgggtgggcgcaccggccggatcgcactttgcccaggtccgccacgccatc
ccgatgctgtcgctgggcaatgcgttcgacgatgccgaagtgctcgatttcgtgcgccgc
atcggcgacaggctcggtcgcgaaaggctgatcttttcggccgagcccaagctcgatggc
ctggccgtgagcctgcgctacgaacacggcaggttcgtgcagggcgccacccgcggcgat
ggcttcaccggcgaggacgtcaccgccaacctgcgcacggtcaaggcgatcccactgaag
ctgcgcggcagcggttggccggacgtgctggaagtccgcggcgaggtctacatgccgcgc
gccgcgttcgaggcctacaaccaacaggcgcgcctgcacggcggcaaggtgctggccaac
ccacgcaacggcgcggccggatcgctgcgccagctcgatgcgcggatcaccgcgcaacgg
ccgctggccttcttcgcctatggcgtcggccaggtggaaggcggcgccctgccggaccgg
cattcgcaggtgctgcggcagctgcggcaatggggcctgccggtcagtgatctgaccaag
gtggtggaaggcgccgagggcctgctggcctactatcgccagatcggcgcgcgccgcgac
acgctgcccttcgacatcgatggggtggtctacaagctggacgatgtgcagggccagcgc
gagatgggcttcgtctcgcgcgccccgcgctgggccctcgcccacaagtatccggcgcag
gagcaatccaccacggtggaagccatccagatccagatcggtcgcagcggcgcggccacg
ccggtggcgcggctggcgccggtgcaggtcgccggcgtcaccgtcaccaatgccaccctg
cacaacgccgaccagatcaagcggttggacgtgcgggtgggcgatgcggtcatcgtgcgc
cgtgccggcgatgtgatcccggaagtggtcggcgtgatcctcgaacgccggcccaagggc
accacgccctggcagatgcccaggcattgcccggtgtgcggctcggacatcgtgcgcgag
gagggcgccgcggtctggcgctgctcgggcgagctgagctgcccggcccagcgcaaggag
gccattggccatttcgtctcgcgccgggcgatggatgtggacgggctgggcgagaagttc
atcgaagtgctggtcgatgccggcgtggtccagggcgtggccgacctgtacaggctcgac
ctggacctgctgctgcagttgcgcctggtcaccagcgcgcaaacgcccgaaggcttcctg
cgcgcggcgcgcgagcatctggccagcggcgcgtattcgaccctggaggccaccgtcgcc
aggatctgcggcaaggccggagcggtgccggacacctggcaggccgagctgctgcgcgcc
ggtcttccggccttcgactggaaccgcaagaagatcgccagcaaatgggcccagaacctg
atcgccgcgctggacaagagcaagcacaccaccctggagcgtttcctgttcgcgctgggc
atcgagcacgtcggtgagagcacggccaaggcgctggcggcgtggttcggcgatctggcc
ctgatccgcacgctgccctggccactgttcaagcgcgtgcccgacatcggtggcgaagtg
gcgcgcgcgctgggcagcttcttcgcccaggcaggcaaccagcaggccatcgatgcgctg
ctgcaacgcggggtggtgatcggcgacacccatccgcccagcgcgctgctgcgccaaggc
ctggacctggccacgctgctggtcgacctggaaatccccaggctcaccaggatccgcgcc
gagtccctggtcaaggcgctgcccgaggtcgacgacattctccaggccgggccggaggcg
ctggtcggcgcgggcctgccccaggacacggccgccgccctgatccaatggctgcgcgaa
gacgaccacgcgcaactgctgcaggccgccggcgcggccctcaagcagctcgacgcgatc
accccgcagcaggcgacgggccaagccggcccgctcagcggccagaccgtcgtgctcacc
ggcagcctggaagccatgacccgcgagcaggccggcgccaagctcgaggcactgggcgcc
aaggtcaccggcagcgtgtcgaagaagaccagcttcgtggtggccggcgccgaagccggt
tccaagctgaccaaggcccgggagctgggcatcgaagtctgggatgaagccaggctgctg
gaatttcttgcagggcagcgtgcatga
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integrated database retrieval system
