Pseudomonas sp. Stari2: NH234_27760
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Entry
NH234_27760 CDS
T10554
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt03030
DNA replication
psdt03410
Base excision repair
psdt03420
Nucleotide excision repair
psdt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NH234_27760 (ligB)
03410 Base excision repair
NH234_27760 (ligB)
03420 Nucleotide excision repair
NH234_27760 (ligB)
03430 Mismatch repair
NH234_27760 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psdt03032
]
NH234_27760 (ligB)
03400 DNA repair and recombination proteins [BR:
psdt03400
]
NH234_27760 (ligB)
Enzymes [BR:
psdt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NH234_27760 (ligB)
DNA replication proteins [BR:
psdt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NH234_27760 (ligB)
DNA repair and recombination proteins [BR:
psdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NH234_27760 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NH234_27760 (ligB)
MMR (mismatch excision repair)
DNA ligase
NH234_27760 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NH234_27760 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
HHH_5
DUF3701
Motif
Other DBs
NCBI-ProteinID:
XCY00078
LinkDB
All DBs
Position
6054119..6055798
Genome browser
AA seq
559 aa
AA seq
DB search
MLATLHLFCIFLLFSAHLGAFADDCPDWAVDRARSEITALQQQIDQWDDTYHRKGRSLIA
DELYDQSRTRLGEWRQCFKLPSPTKPLRTAAGPVAHPITHTGLDKLHDAADIEAWLRDRK
DVWAQPKIDGVAITLVYRAGRLQQAISRGDGIRGQDWTASAHQISAIPQQLTQPLDLSVQ
GELYWRLTDHIQARAGSANARATVAGLMGRKDLSAEQAAGIGLFVWDWPLGPNSLTERIT
GLATLGFATIEPYSHPVSGLADAQQWRDHWYRSPLPFASDGIVLRQSQRPAAERWQARSP
FWAVAWKYPFAQALADVRKVNFKIGRTGRITPVLELTPVMLDDRQIRRVSVSSLKRWQEL
DIRPGDQVAISLAGLTIPRLDSVVLRSTERVELNVPFASDFHPLSCWQPTPGCESQFLAR
LIWLGGKQGLALPHVGRGTWEKLLDTGRLNSLLDWLPLDESELAKIAGLGERSSARLSHS
FHSARQRPFTQWLKALGLPPTGQASLADSWQALAQRNTEQWQAEPGIGPGRAAQLNAFFR
DPQVLALSETLRAAGIDGF
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccacactgcacctgttttgcattttcctgctgttctccgcccacctcggcgcc
tttgctgacgattgcccggactgggctgtcgaccgggcccgaagcgaaatcaccgccctg
cagcagcagatcgatcagtgggacgacacctatcaccgcaaaggccggtcgctgatcgcc
gatgaactctacgatcagtcccgcacccggctcggcgaatggcgccagtgcttcaaactt
ccttcaccgaccaagccgttacggactgcggccggtccggtcgcgcacccgatcacccat
actggtctcgacaaacttcacgacgctgcggacatcgaagcctggctgcgcgaccgcaag
gacgtctgggcacaacccaagatcgacggcgtggccatcacgctggtctatcgcgccggg
cgtttacagcaggcgatcagtcgcggcgacgggattcgggggcaggactggaccgcctcg
gcacaccagatcagcgccattccccagcaactgacacaaccgctggatctgtcagtgcag
ggcgaactctattggcgactgaccgaccatatccaggctcgcgccggcagcgccaatgcc
cgcgcaacagtcgccggcctgatgggacgcaaggacttgagtgccgaacaggcagcgggc
atcgggctgtttgtctgggactggccgctgggaccgaacagcctgacagagcgaatcacg
ggtctggcaactctgggcttcgccacgatagaaccttacagccaccccgtcagtggcctt
gccgatgcgcagcagtggcgcgatcactggtatcgctcgccgctgccctttgccagcgac
ggcatcgtcctgcgtcagagccagcgtcctgctgccgaacgctggcaggcgcgctcgcct
ttctgggccgtggcctggaagtacccgttcgcccaggcattggccgatgtacgcaaggtc
aatttcaagatcggccgtaccgggcgcatcacccctgtgctggaattgacgccggtcatg
ctcgacgaccgccagatcagacgggtcagcgtcagctcactcaaacgctggcaggaactg
gatattcgccctggtgaccaagtggcgatcagcctggccgggctgacgattccgcgactc
gacagcgtcgtgctgcgcagcacggagcgcgtcgaattaaatgtcccgttcgccagcgac
tttcacccgctaagctgctggcaaccgacgcccgggtgcgagagtcagttcctcgcgcgc
ctgatctggcttggcggcaagcaagggctggcactgccccatgtcggtcgcggcacgtgg
gagaaacttctggatacaggccgcctgaacagcctgctggattggttgcccctcgacgag
tcagagcttgctaagattgccggcctcggcgagcgcagcagcgctcgcctgtcgcacagt
tttcacagcgctcgccagcgccctttcacccaatggctcaaagccctcgggctgccgccg
accggccaggcttccttggctgactcatggcaagcgctggcacaacgaaataccgaacaa
tggcaggcagaacccggaatcggccccggtcgtgcggcgcaattgaacgctttttttcgc
gacccgcaggtgctggccctgagtgaaaccttacgtgccgccggaatcgacggtttctga
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