Pseudogulbenkiania sp. NH8B: NH8B_0475
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Entry
NH8B_0475 CDS
T01619
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse03030
DNA replication
pse03410
Base excision repair
pse03420
Nucleotide excision repair
pse03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NH8B_0475 (ligA)
03410 Base excision repair
NH8B_0475 (ligA)
03420 Nucleotide excision repair
NH8B_0475 (ligA)
03430 Mismatch repair
NH8B_0475 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pse03032
]
NH8B_0475 (ligA)
03400 DNA repair and recombination proteins [BR:
pse03400
]
NH8B_0475 (ligA)
Enzymes [BR:
pse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NH8B_0475 (ligA)
DNA replication proteins [BR:
pse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NH8B_0475 (ligA)
DNA repair and recombination proteins [BR:
pse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NH8B_0475 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NH8B_0475 (ligA)
MMR (mismatch excision repair)
DNA ligase
NH8B_0475 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NH8B_0475 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
Nlig-Ia
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BAK75310
UniProt:
G2IWF5
LinkDB
All DBs
Position
498099..500534
Genome browser
AA seq
811 aa
AA seq
DB search
MSQSNEREQAVQRIAELVPLLNRYSREYYEQDAPTVPDVEYDRLYRELEALEAAHPELHR
ADSPTLRVGGAPLAEFSSVTHAVPMLSLNNAFSDPDAADFEQRHAELIQFDERVRKALGG
AEVEYAVQPKFDGLAVSLLYRDGVLVQGATRGDGFSGENVTENLRTVRAIPLRLAIEHPP
ALLEVRGEVLMLKRDFEQLNAEQAARGDKTFANPRNAAAGSLRQLDSRITARRRLSFFAY
AIAQVEGADWPTSHQAELDWLHRLGIPLVPAELRPVVRGVAGLAAYYEAILRQRASLPYD
IDGVVYKVNDRAQQEALGFVSRAPRWAIAHKFPAEEALTLVEAIEEQVGRTGAITPVARL
KPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMRPVAGG
DLFNSGDEPQYPAYRLPTTCPVCGSHVVREEGEAIARCSGGLICRAQRSQAIQHFAGRRM
MDIDGLGERYIDNLVEFGYVDSVADLYTLQLADLLEMKRRADERDGVVPETVQKGQIATK
WAENLLAAIAGSRRPTLARLLFALGIRHVGESTAKTLADWLGRLELIRRAPAPLLAALPD
IGGVVAEAIADFFAEDNNETVLEALLRHVEPGDEHAPSPKLAERLQPAALLARLGIPRLT
ELRSQQLAGQIAGLAALAASERRELMQLDLPADVFNALADWLDEPGRRAELSQLASLVDA
ILADLPTQPSSANLLLEGKTLVLTGTLPTLSRDQAKELIEAAGGKVAGSVSKKTHYVVAG
EAAGSKLAKAEELGVPVLNEAGLLALLDQAE
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaatcgaacgagcgcgaacaggcggtgcagcgcatcgccgaactggtgccgctc
ttgaaccgctacagccgcgaatactacgaacaggatgcgccgacggtgccggacgtcgag
tacgaccgcctgtaccgcgaactggaggcgctggaggcggctcatcccgagctgcaccgc
gccgactcgccgaccctgcgtgtcggtggcgcgccgctggccgagttttccagcgtgacc
catgccgtgccgatgctgtcgctgaacaacgccttctccgaccccgatgccgccgacttc
gagcagcgccacgccgagctgatccagttcgacgagcgcgtgcgcaaggcgctggggggg
gcggaggtcgagtacgcggtgcagcccaagttcgacgggctggcggtcagcctgctctac
cgcgacggcgtgctggtgcagggcgccacccgtggcgatggtttctccggcgagaacgtc
accgagaatctgcgcaccgtgcgtgccatcccgctgcgtctggccatcgaacacccgccg
gcgctgctggaagtgcgcggcgaggtgctgatgctcaagcgtgatttcgagcagctcaac
gccgagcaggccgcgcgcggcgacaagaccttcgccaacccgcgcaacgccgccgctggc
agcctgcgccagctcgattcgcgcatcaccgcgcggcgtcggctgtcgttcttcgcctac
gccatcgcccaggtcgagggcgccgactggccgacctcgcaccaggccgaacttgactgg
ctgcaccggctcggcatcccgctggtgccggccgaactgcgcccggtggtgcgtggcgtg
gcagggctggccgcctactacgaggccatcctgcgccagcgtgccagcctgccgtacgac
atcgacggcgtggtgtacaaggtcaacgaccgtgcccagcaggaggcgctcggcttcgtc
tcgcgcgcgccgcgctgggccatcgcccacaagtttcccgccgaagaggcgctgaccctg
gtcgaggcgatcgaggagcaggtcggccgcaccggcgctatcacgccggtggcgcgtctc
aagcccgtcttcgtcggcggcgtcaccgtcaccaacgccacgctgcacaacgaggacgag
gtgcggcgcaaggacgtgcgcgtcggcgataccgtgatcgtgcgccgagccggcgacgtc
atccccgaggtggtggccgtggtgctggagcgccggccgatgcgtccggtggccggcggc
gacctgttcaacagcggcgacgagccgcaatatccggcctaccgtctgccgaccacctgc
cccgtatgcggcagccacgtggtgcgcgaggagggcgaggcgattgcgcgctgctccggt
ggcctgatctgccgcgcccagcgcagccaggcgatccagcatttcgccgggcgccgcatg
atggacatcgacggcctgggcgagcgctacatcgacaacctggtcgagttcggctatgtc
gacagcgtggccgatctctacacccttcagcttgccgatctcttggaaatgaagcgtcgc
gccgacgagcgcgacggggtggtgccggaaacggtgcagaagggccagatcgccaccaag
tgggcggagaacctgcttgccgccatcgccggcagccgccgtccgacgctggcgcggctg
ctgttcgcgctcggcatccgccacgtcggcgaatccaccgccaagaccttggccgactgg
ctggggcgtctcgagctcatccgccgcgccccggcaccgctcttggccgcactgcccgac
atcggcggcgtggtggccgaggccatcgccgacttcttcgccgaggacaacaacgagacg
gtgctcgaggccctgctgcgccatgtcgaacctggcgacgagcacgcgccgtcgcccaag
ttggccgaacgactgcagccggcggcgttgctggcgcggctcggcatcccgcgcctgacc
gaactgcgcagccagcagctggccggccagatcgccggccttgccgccctggcggccagc
gagcggcgcgagctgatgcagctcgatctgccagccgacgtcttcaacgccctggcagat
tggctcgacgagccgggccggcgtgccgagctgagccaactcgcctcgctggtggacgct
atcctggccgacctgcccacgcagccgtcttcggccaacctgttgctggagggcaagacc
ctggtgctgaccggcacgctgcccacgctgtcgcgcgaccaggccaaggagctgatcgag
gcagccggcggcaaggtggccggcagcgtgtcgaagaaaacccactacgtggtggccggc
gaggcggcgggcagcaagctcgccaaggccgaggagctcggcgtgccggtgctcaacgag
gccggcctgctagcgctgctggaccaggcggagtga
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