Pseudorhodobacter turbinis: EOK75_13940
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Entry
EOK75_13940 CDS
T05954
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pseb
Pseudorhodobacter turbinis
Pathway
pseb03030
DNA replication
pseb03410
Base excision repair
pseb03420
Nucleotide excision repair
pseb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pseb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EOK75_13940 (ligA)
03410 Base excision repair
EOK75_13940 (ligA)
03420 Nucleotide excision repair
EOK75_13940 (ligA)
03430 Mismatch repair
EOK75_13940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pseb03032
]
EOK75_13940 (ligA)
03400 DNA repair and recombination proteins [BR:
pseb03400
]
EOK75_13940 (ligA)
Enzymes [BR:
pseb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EOK75_13940 (ligA)
DNA replication proteins [BR:
pseb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EOK75_13940 (ligA)
DNA repair and recombination proteins [BR:
pseb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EOK75_13940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EOK75_13940 (ligA)
MMR (mismatch excision repair)
DNA ligase
EOK75_13940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EOK75_13940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QCO57982
UniProt:
A0A4P8EM64
LinkDB
All DBs
Position
unnamed1:complement(334879..336990)
Genome browser
AA seq
703 aa
AA seq
DB search
MQDQDVETLTEVEASAELERLAELLQAANLAYHTKDAPEISDADYDKFKRRNLAIEARFP
HLKRADSPSDQVGAVVAEGFSKVAHEVPMLSLGNAFDDTDVEDFEERIRKYLGHSSPLAF
TAEPKIDGLSLSLRYEQGKLVHAATRGDGAVGENVTENACTISDIPQVLTDAPDVLEVRG
EVYMSHADFQALNERQTARGGKVFANPRNAAAGSLRQLESSITAARPLRFFAYAWGALSS
PLADTQMGAINRLKSLGFQVNPLTILCDSTAAMLAHYRKIETQRATLGYDIDGVVYKVDD
LTLQRRLGFRSTTPRWAIAHKFPAELAWTRLTDINIQVGRTGALSPVARLDPVTVGGVVV
SNATLHNEDYIAGRDSKGAEIRGGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPADAKPF
EFPSVCPECKSQALREEGDAIRRCSGGLICPAQAVERLRHFVSRAAFDIEGLGAKQVEAF
YRDGWVNTPADIFTLRTRFGTGLQQLKNREGWGEKSALNLFDAIDEKRKVPLNRLIFALG
IRHIGESSAKLLANRYASWAAFENAMTHAEIGKGPQWEELLSIDGIGEVLAASAIAAFHN
DRERAAIDALVAELEVQPVIARSPSDSPVAGKTVVFTGTLEKMTRAEAKARAESLGAKVS
GSVSAKTDILVAGPGAGSKAKAAASLGVEIIDEDGWLSLIGDA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatcaagatgttgaaacgctgaccgaagttgaggccagcgcagagcttgaaagg
cttgcagagctattgcaggctgccaatcttgcgtatcacacgaaagacgcgccagaaatt
tccgatgccgactatgacaagttcaagcggcggaaccttgcgatcgaggcacggttcccg
catttgaagcgggcggacagcccgtcagatcaggttggggcagtggtcgcggagggcttt
tccaaagttgcgcatgaagtgcctatgctgagcttgggcaatgcctttgatgataccgat
gtcgaagattttgaggaacgcatccggaaataccttggccatagcagcccgctggctttc
acggctgagcccaaaattgatggcctgtcgttgtctttgcggtatgagcagggcaaattg
gtgcatgcggcgacgcgtggcgatggtgcagtgggtgaaaatgtcaccgagaatgcatgt
acaatttctgatattccccaagtgctaacggatgcccccgacgttttggaagtgcgcggc
gaggtctatatgagccacgcagattttcaggcattgaacgaacggcaaaccgcgcgcggg
gggaaagtgttcgctaatccgcgcaatgcagcggccgggtcactgcgccagctggaatca
agcattaccgcagcgcgccctttgcgttttttcgcctatgcttggggggcgttatcatcg
cccttggcagatacccagatgggcgcgatcaacaggctgaaatcgctggggtttcaagta
aacccgcttaccatcttatgcgactctacggccgctatgttggcccactaccgcaagatt
gaaacccagcgcgccacgcttggctatgatatcgacggggtggtttacaaggttgatgac
ctgacacttcagcggcgtctcggatttcgatccacaacgcctcgctgggcaatcgcgcat
aaatttccggcagagctggcttggacgcgcctgacggatatcaacattcaagttggccgc
actggcgcgctttcacccgttgccagattggatcccgttactgttggcggggttgttgtg
tccaatgctacgctgcataatgaagattacatcgcgggtcgggacagcaaaggtgccgag
attaggggcggcaaagacattcgcgttggtgattgggtgcaagtttaccgggccggcgat
gtgatccccaagattgcggatgtcgatctgtcaaaacgtccagctgatgccaagccattt
gaatttccgtccgtttgtccggaatgcaaatcccaagccctgcgagaggagggcgatgcc
attcgccgttgtagcggtgggttgatctgccccgcacaagctgttgagcggcttcgtcat
ttcgtgagcagggccgcttttgatattgaaggactgggcgcgaaacaggtagaggccttc
taccgcgatggctgggtgaacacgcccgctgatatttttacgcttcggacgcgctttgga
acgggtttgcaacagttaaaaaaccgcgagggctggggagagaaatcagcgctcaacctg
tttgatgccattgatgagaaacgcaaagtaccactgaaccggttaattttcgccctcggg
atccgccatatcggcgagagttcggcaaagcttctggccaatcgctatgcgagctgggcc
gcatttgaaaatgctatgacccatgccgagattggcaaaggcccacaatgggaagaactt
ttgtcgattgacgggattggcgaggtgctcgccgcctcggccattgccgcttttcacaat
gatcgcgaacgcgcggcgattgatgcgcttgtcgcggaattggaagtacagcccgtgatt
gcgcgcagcccaagcgatagccccgtggctggaaaaaccgtggttttcaccggaactttg
gaaaaaatgacgcgggcagaggccaaagcgcgcgcagagagccttggcgccaaggtctcg
ggctcggtctcggccaagacggatattctggttgcgggtccgggagcagggtccaaggcc
aaggcagcggcatccttgggggttgaaatcattgatgaagatggttggttgtcattgata
ggcgacgcatga
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