Pseudomonas sp. CCOS 191: CCOS191_3695
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Entry
CCOS191_3695 CDS
T03967
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psec
Pseudomonas sp. CCOS 191
Pathway
psec03030
DNA replication
psec03410
Base excision repair
psec03420
Nucleotide excision repair
psec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCOS191_3695 (ligA)
03410 Base excision repair
CCOS191_3695 (ligA)
03420 Nucleotide excision repair
CCOS191_3695 (ligA)
03430 Mismatch repair
CCOS191_3695 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psec03032
]
CCOS191_3695 (ligA)
03400 DNA repair and recombination proteins [BR:
psec03400
]
CCOS191_3695 (ligA)
Enzymes [BR:
psec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCOS191_3695 (ligA)
DNA replication proteins [BR:
psec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCOS191_3695 (ligA)
DNA repair and recombination proteins [BR:
psec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCOS191_3695 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCOS191_3695 (ligA)
MMR (mismatch excision repair)
DNA ligase
CCOS191_3695 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCOS191_3695 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
DUF2481
Motif
Other DBs
NCBI-ProteinID:
CRI58231
UniProt:
A0A0F7Y1F8
LinkDB
All DBs
Position
I:complement(4204264..4206606)
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AA seq
780 aa
AA seq
DB search
MNAESRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALETEHPHLVTPDSPTQR
VGGAALAAFSQVRHEIPMLSLGNAFEEDDLRDFGRRVVEGLDLPGGDQAAVDYSCEPKLD
GLAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMS
KAGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSEPFGDS
HIGILEKLKTWGLPISRELRHAAGIDECLAYYRDIGARRNSLPYEIDGVVFKVNALASQR
ELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATL
HNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARAVQVPNQCPVCGSQVERT
QLVKRSKGKETTSEGAVYRCVGRLSCAAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEN
LIRSPADLYKLEFEQVVALEGFAEVSSRKLLEAIEASKRPSLARFIYALGIPDVGEETAK
VLARSLGSLARVQVALPQVLTYLPDIGLEVAYEIHNFFEDEHNRAVIKQLLDSGMQLQDE
GELGAEFAASTTLAGMLAKLDIPSVGPTGAEKLVDKLGTLDKIIAADGIDLRQALNTKAA
DGVREFFKVEANQQLARAIEAQLLDFGMHWSCEKKSAEGLPLAGQTWVLTGTLERMSRDI
AKEKLENLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVAVMDEDAFVAFLAERGIDV
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgaatcccgaatccacgaactgcgcgccgaactcgaccagcacaactaccgc
tactacgtgctcgacgaacccagcgtgcccgatgccgaatacgaccgcctgttcaatgag
ctcaaggcgctggaaaccgagcacccgcacctggtgacaccggattcgccgacccagcgc
gtcggcggcgcggcgttggcggccttcagccaggtgcgtcacgagataccgatgctcagc
ctgggcaacgccttcgaggaagacgacctgcgcgacttcggtcgccgcgtggtcgaaggc
ctggacctgccgggcggcgatcaggcggccgtggactacagctgcgagcccaagctcgac
gggctggcggtgagcctgctgtaccgcgacggccagctggtgcagggcgccacccgcggc
gacggcactaccggtgaggacatcagcgccaacgtgcgcaccgtgcgcaacatcccgctc
aagctgcagggcgagggctggccggcggtgctggaagtgcgcggcgaggtgtacatgagc
aaggctggtttcgaccggctcaatgcggcccaggccgaggccggcggcaagacctttgcc
aacccgcgcaacgccgccgccggcagcctgcgccaactggactcgaagatcaccgccagc
cgcccgctggaattctgctgctatggcgtcggccaggtgtccgagccgtttggcgacagc
catatcggtatcctggagaaactcaagacctgggggctgccgatcagccgcgagctcagg
cacgccgccggtatcgacgagtgcctggcctattaccgggacatcggtgcgcgccgcaac
agcctgccctacgagatcgatggggtggtgttcaaggtcaatgccctggcctcccagcgc
gagctgggtttccgtgcccgtgaaccgcgctgggcgattgcccacaagttcccggccatg
gaagagctcaccgaggtgctcgatgtcgagttccaggtcgggcgaactggcgcggtgact
ccagtggcccgtctcaagccggtcaaggtggccggtgtgaccgtctccaacgccaccctg
cacaacatggacgagatcgcacgcctgggcctgcgcattggcgacacggtgatcatccgc
cgtgccggcgacgtgatcccgcaagtcatgcaggtggtgctcgagcgccgtccgcaaggc
gctcgggcggtgcaggtgccgaaccaatgcccggtgtgcggctcgcaggtcgagcgcacc
cagctggtcaagcgcagcaagggcaaggaaaccaccagcgaaggcgcggtgtaccgctgc
gtggggcgcctgagctgcgccgcccagctcaagcaggcgatcattcattatgtgtcgcgc
cgggccatggacatcgatggcctgggcgaaaagagcgtcgagcaactggtcgatgaaaac
ctgatccgctcgccggccgacctctacaaactggaattcgagcaagtggtcgcccttgaa
ggctttgccgaggtctccagccgcaagctgctcgaagccatcgaggccagcaagcgcccg
agcctggcgcgtttcatctacgcccttggcatccccgatgtcggcgaggagaccgccaag
gtcctggcccgctccttgggcagcctggcgcgggtgcaggtggcgctgccacaggtgctg
acctacctgccggacatcggcctggaagtcgcttacgagatccataatttcttcgaggac
gaacacaaccgtgcggtgatcaagcagctgttggacagcggtatgcaactgcaggatgaa
ggtgagctgggcgccgagttcgccgccagcaccaccctcgccgggatgctcgccaagctc
gatatcccgtcggtcggcccgaccggtgccgagaagctggtggacaagctgggcaccctg
gacaagatcatcgccgccgatggcatcgacttgcgccaggccctgaacaccaaggccgcc
gacggggtgcgcgagttcttcaaggtcgaggccaaccagcagttggcccgcgccatcgaa
gcccagttgctggacttcggcatgcactggtcgtgcgagaagaaatccgccgagggtttg
ccgctggccggccagacctgggtgctgaccggtaccctggagcgcatgagccgcgatatc
gccaaggaaaagctggaaaacctgggggccaaggtggcgggttcagtgtccggcaagacc
cattgcgtggtggccgggcccggcgcgggctcgaagctggccaaggccagcgagctgggc
gtggcggtgatggacgaggatgccttcgtggccttccttgcggagcgcggaatcgacgtc
tga
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