Pseudodesulfovibrio sediminis: PSDVSF_02260
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Entry
PSDVSF_02260 CDS
T08380
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03030
DNA replication
psef03410
Base excision repair
psef03420
Nucleotide excision repair
psef03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSDVSF_02260 (ligA)
03410 Base excision repair
PSDVSF_02260 (ligA)
03420 Nucleotide excision repair
PSDVSF_02260 (ligA)
03430 Mismatch repair
PSDVSF_02260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psef03032
]
PSDVSF_02260 (ligA)
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_02260 (ligA)
Enzymes [BR:
psef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSDVSF_02260 (ligA)
DNA replication proteins [BR:
psef03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSDVSF_02260 (ligA)
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSDVSF_02260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSDVSF_02260 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSDVSF_02260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSDVSF_02260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
BRCT_2
HHH
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
BCS86984
LinkDB
All DBs
Position
241453..243531
Genome browser
AA seq
692 aa
AA seq
DB search
MASSSVIERAAFLREKIEYHNHRYYVLDAPEITDIEYDALFRELAALEETHPELDDPNSP
TRRVGGEPAEGFTPYEHAQRMYSLDNGMNLEAWQAFTERVVKGLDSDDIQYWADPKMDGL
AMEVIYEQGRFVRAATRGDGLIGEDVTHNMRTVMNLPLTLRGQAVPELLEVRGEVIMSNV
DFAALNTRQAEAGEKVFANPRNAAAGTIRQLDPKVAASRPLQFMGYGIGRVQSGGEESPW
TTQQEIMEGLGQLGFAVAAEARLCRTSQDVAAYFETLMAQRDDLPYEIDGVVAKVNSIEM
QEALGFTSRAPRWALALKFPAHQIKTRLHAIRIQVGRSGVLTPVAELEPVRLAGVEVSKA
TLHNKGYIEERDFRIGDTVLIQRAGDVIPQVLSVDLEQRPASARKYEFVMKCPVCGSEAV
EDGERVICTNPTCPAKTVQRMIHFVSKAGLDMEGVGKKWVQKLAEEGVLTTPADLFTLKK
TDLLKYERMGDKSAEKFIAAIEKARKVAPLWRLVAGLGIRHVGEQTARTLANNFEDLEAI
GRVSREELQDLNDVGPVVAESLSTYFQSEEARELFDKFKAIGFWPKGGGVKSEAAESLPL
EGKVFIFTGSLPVKRPEAQAMVEAQGGISVNAISKKVDYVVAGEKAGSKIAKAEKLGLDI
IDFTTFQALLHTQEQDVSPKPELKKQKSLLDF
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatcaagcgtcatagagcgcgcagcattcttgcgtgaaaaaatcgagtaccat
aaccatagatattacgtgcttgatgcaccggaaatcaccgatatcgaatacgatgcgctt
tttcgtgagctggccgctctggaagagacgcaccctgagttggatgatcccaattcaccc
accaggcgtgtgggaggagagcctgccgaagggtttactccctatgaacacgctcagcgt
atgtacagcctggacaacggtatgaatctggaggcatggcaggcgtttacggagcgtgtg
gtcaaaggtctggacagcgatgacattcagtattgggctgatccgaagatggatggtctg
gccatggaagtgatctacgaacaagggcggtttgtcagggcggcaacccgaggcgatggg
ttgataggtgaagacgtgacccataatatgcgcactgtcatgaatctgcccttgacgctt
cgtggacaggcggttccggagttactggaagtccgtggcgaagtcatcatgtccaatgtt
gatttcgccgcacttaacactcgacaggccgaggctggtgaaaaggtctttgctaatcct
cgaaacgcggcagccgggaccattcgtcagcttgatcccaaagtggcagcatcgcgcccg
ttgcagttcatgggctatggcatagggcgtgtacagtcggggggagaggagtctccctgg
accacccagcaggagattatggaagggcttgggcaactcggttttgctgttgctgccgaa
gctcgtttgtgccggactagccaggatgtcgcagcgtattttgaaacgctcatggctcag
agggatgacctgccctatgagattgatggtgtggttgccaaggtcaacagcattgagatg
caggaagcgctcggctttacctcccgcgctccccgttgggcgttggcgctcaaatttcca
gcgcatcagatcaagacacgactccatgctatccgtatccaggtgggccggagtggcgtg
ttgacacctgtcgctgaactggagccggttcgactggctggcgttgaggtttccaaggcg
acactccataacaagggatatattgaggaacgggattttcgtatcggtgataccgtgctt
atccagcgggccggagatgtcattccgcaggttttgtctgtggatcttgaacagcgtcct
gcatccgccaggaagtacgaatttgtcatgaaatgtccggtctgtgggagtgaggccgtt
gaagatggggagcgggtgatctgtaccaacccgacctgtccagccaagacggttcaacga
atgattcattttgtttccaaggccgggctggacatggaaggcgtaggcaagaagtgggtc
cagaagcttgctgaagaaggcgtcctgacaacacctgcggatcttttcacactcaagaaa
accgatctgctcaaatatgagcgtatgggcgacaagtcagctgaaaaatttattgcagct
attgaaaaagcaaggaaagtggccccgttatggcgacttgttgccggactcggtatccgt
catgtgggcgaacagacagcccgcacacttgccaataattttgaagatctggaagccatt
ggcagggtttcgcgtgaagagttgcaggatttgaacgatgtcggtcctgttgtcgctgaa
agcctttcaacatactttcagagtgaggaagccagggaactgttcgataaattcaaggcc
attggtttctggccaaaaggcggaggcgtaaaaagcgaagccgccgaaagtcttcccctt
gagggaaaggtgttcatttttaccggctcattgcctgtgaagcgaccggaagcgcaggca
atggtcgaagcgcagggcggcatctctgtcaacgctatttccaagaaggtggactatgtg
gttgcaggtgaaaaagctggctcaaagatcgccaaagccgagaagctgggacttgatatt
attgactttacgacctttcaggcattactgcacacgcaggagcaggacgtttctccaaag
cctgaactgaagaaacagaagtccttgttggacttctaa
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