Paraflavitalea soli: D3H65_24280
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Entry
D3H65_24280 CDS
T05640
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pseg
Paraflavitalea soli
Pathway
pseg03030
DNA replication
pseg03410
Base excision repair
pseg03420
Nucleotide excision repair
pseg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pseg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D3H65_24280 (ligA)
03410 Base excision repair
D3H65_24280 (ligA)
03420 Nucleotide excision repair
D3H65_24280 (ligA)
03430 Mismatch repair
D3H65_24280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pseg03032
]
D3H65_24280 (ligA)
03400 DNA repair and recombination proteins [BR:
pseg03400
]
D3H65_24280 (ligA)
Enzymes [BR:
pseg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D3H65_24280 (ligA)
DNA replication proteins [BR:
pseg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D3H65_24280 (ligA)
DNA repair and recombination proteins [BR:
pseg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D3H65_24280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D3H65_24280 (ligA)
MMR (mismatch excision repair)
DNA ligase
D3H65_24280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D3H65_24280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AXY76912
UniProt:
A0A3B7MQZ0
LinkDB
All DBs
Position
6342818..6344920
Genome browser
AA seq
700 aa
AA seq
DB search
MYSTGQTKSLQQLTITLLEKVTKDKINPANEVNELREVLRFHEYRYYIMNDPLVADYEYD
QLFKALEKIEAQHPELITSDSPTMRVAKGLTKDFPPAPHLVPMLSLENSYNEQDLVDWDR
KNRELAKMDNIEYCVEPKFDGASISLIYENDLLARGATRGDGVQGDEITTNIKQIRSVPL
SAKISAYGLQQLEIRGEVLLTKANFKKYNDQLIEQSLAPLANPRNAAAGSLRIKDPKEVS
KRNLEAFLYNISYYVTLPGAPVHKLLETHSGSLEMLWELGFRSPMKEKMVFKGIDAVVKY
CHEYEQKRDDLPYEIDGMVIKVNKVELQDQLGMTTHHPRWAMAYKFKARQATSKLKAVEF
QVGRTGSVTPVAKIEPVPIGGVTVGSISLFNEEVIREKDLMIGDSVLVERAGDVIPYIVK
SLPELRTGKEQPIVFPTKCPVCHDKLVKTADEAVWRCVNINCEAQVLQRIFHFTSKDAMD
IRGLGEAIVQKFYDLGFLKDIPGIYTLPFDKIRGLEGFGEKSITNLQAAITASKEQPLHR
LIFALGIRYVGETTAKTLAHAVKHLLDFAQFSLEELQALEDVGPKVAGSIYQFFRNPDNI
SMLQHLETLGLKLKNDKKDIVVDGNLSGQTFLFTGTLPTLKRSEAEALVESNGGKLQGSV
SSKLNYLVAGEEAGSKLEKAKKITSIKIISEAEFLSLVNR
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtactccactggccaaaccaaatcattgcaacagctcaccatcactttactcgagaag
gtcacaaaggataaaataaaccccgccaatgaggtgaacgagctgagggaggtactgcgc
tttcatgaataccgctattacatcatgaatgatcccctggtggccgattacgaatatgat
cagttgttcaaagccctggagaaaatagaggctcagcatccggagctcattacctccgat
tcacctaccatgcgcgtggccaaaggccttaccaaagattttcccccggccccccacctc
gtacccatgctttccctggaaaattcctacaatgagcaggacttggtcgactgggaccgc
aagaacagggagctggccaaaatggacaatattgagtattgcgtggaacctaaatttgat
ggcgccagcatatccctgatctatgaaaatgatctcctggcccggggagctacccgtgga
gatggcgttcagggcgacgaaataaccaccaatataaaacagatacgctccgtacccctg
agcgcaaagatctcagcctatggactccagcagctggaaataagaggcgaagtattactg
acaaaagccaactttaaaaaatacaacgatcagctgatcgaacaaagccttgctccatta
gccaatccacgcaatgcggccgctggttctttgcgcatcaaagatcccaaagaagtaagc
aagcgtaacctggaagccttcctgtacaacatcagctactacgttacactgcccggagcc
cccgttcataaactcctcgaaacgcacagcggttccctggaaatgttgtgggagctgggt
ttccgtagccctatgaaagaaaagatggtcttcaagggcatcgatgctgtcgtaaagtat
tgccatgaatatgagcaaaaacgtgatgaccttccttatgaaattgatggcatggtaatc
aaggtcaataaggtggaattgcaggatcaattgggcatgactacccaccacccgcgctgg
gccatggcttataaattcaaagcccggcaggccaccagcaaacttaaagccgtagagttc
caggtgggccgtaccggttccgtgacccccgtagctaaaatagaaccagtgcccattggc
ggcgtaaccgtgggctctatttccctgttcaatgaagaagtgatccgcgaaaaagacctc
atgattggcgattctgtactggtagagcgtgcgggcgatgtgatcccatatatagtaaaa
tcactacccgagcttagaacaggaaaagaacaacccattgtgttccctacaaaatgcccc
gtttgtcacgataaattggtcaagaccgctgatgaggccgtatggcgttgtgtgaacatt
aattgcgaagcacaggtactgcagcgcattttccacttcaccagcaaagatgccatggat
atacgcggccttggtgaagccattgtacagaagttttatgacctgggttttctcaaagac
attcccggtatctacacattaccatttgataaaataagaggcctcgaaggctttggtgag
aaaagtattaccaacctccaggccgctatcactgcctcgaaagaacagccgctgcacagg
ctcatattcgcacttggtattcgatacgtaggcgaaacaaccgccaaaacccttgcccac
gcagtaaagcatttgcttgatttcgctcaattttcgcttgaagaattacaggcactggag
gacgtgggacctaaggtagcaggcagcatctaccagtttttccgtaatcccgataacatc
agtatgcttcagcacctggagaccttgggattgaagttgaaaaatgataaaaaagatata
gtcgttgacggcaacctttcaggacaaacgtttttgtttaccggcaccctgcctaccctg
aaacgcagtgaggctgaggctttggtagaatccaatggaggtaagctacaaggcagcgtg
agtagtaaactcaactatctggtggctggtgaagaggcaggatccaaattggaaaaggct
aagaagatcacctccatcaagatcatttccgaggcagagttcctgagcttggttaaccgc
taa
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