Paraoerskovia sediminicola: GCM125_23100
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Entry
GCM125_23100 CDS
T09128
Symbol
ligA1
Name
(GenBank) DNA ligase 1
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psek
Paraoerskovia sediminicola
Pathway
psek03030
DNA replication
psek03410
Base excision repair
psek03420
Nucleotide excision repair
psek03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCM125_23100 (ligA1)
03410 Base excision repair
GCM125_23100 (ligA1)
03420 Nucleotide excision repair
GCM125_23100 (ligA1)
03430 Mismatch repair
GCM125_23100 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psek03032
]
GCM125_23100 (ligA1)
03400 DNA repair and recombination proteins [BR:
psek03400
]
GCM125_23100 (ligA1)
Enzymes [BR:
psek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GCM125_23100 (ligA1)
DNA replication proteins [BR:
psek03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GCM125_23100 (ligA1)
DNA repair and recombination proteins [BR:
psek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GCM125_23100 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCM125_23100 (ligA1)
MMR (mismatch excision repair)
DNA ligase
GCM125_23100 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GCM125_23100 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
BDZ43011
LinkDB
All DBs
Position
2417917..2420298
Genome browser
AA seq
793 aa
AA seq
DB search
MTERASDRTPDQTDPTTDPTTEAAPDVARARHRWTELAEQLRADQQAYYGDDAPTSSDAD
YDARMRELEQIETEHPELRTPDSPTQHVGAAASTTFDPVDHVERMLSLDNAFNADELAAW
AERVHRELELPAERTVDYLCEVKIDGLAIALLYERGRLVRAATRGDGRTGEDVTANVRTV
EGIPHTLAGDPSTHPHRIEVRGEIFMLVDGFAALNEAQVAAGKAPFANPRNAAAGSLRQK
DPTITAGRPLRMYAHGVGALEWEQGRPTKLERQSDAYALLEGWGVPISPHNRVVDGLAGV
QERIDHFGEHRHDIEHELDGIVVKVDELALQRRLGATSRAPRWAIAYKYPPEEVNTTLLD
IRVNVGRTGRVTPYGVMQPVLVAGSTVEMATLHNASEVARKGVLIGDTVVLRKAGDVIPE
ILGPVVALRDGSERAFVMPTECPSCGTTLAPAKEGDVDIRCPNAESCPAQIRERLFHVAG
RGAFDIEALGWEAAGALTDPEAGRPDDPSVYRPSGKEDEVAPDALPPRQVPVLANEAGLF
DLAPGDLRDVRTWREIRRRVDPAAPGAAGRKTEGTGLWTDRHYFWTVSDKEGPRPSANTD
TLFAELEKAKAQPLWRVLVALSIRHVGPTAARALAQHFGSIDAIQTAAAADDEASQLAAV
DGVGPTIARAVKEWFGDPDEGGWRRGIVDAWAAAGVRTEDERDESVVRTLEGLTVVVTGS
LEGYSRDGAKEAILARGGKAAGSVSKKTDFVVVGENAGSKETKARELGLRILDEAGFTAL
LEGGQDAVTESAS
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgagcgagccagcgatcgaacccctgatcagaccgacccgacgaccgacccgacg
actgaggcggctcccgacgtggctcgggcgcgccaccggtggaccgagctcgcggagcag
ctgcgggccgaccagcaggcgtactacggcgacgacgcgccgacgtcctccgacgccgac
tacgacgcgcggatgcgcgagctcgagcagatcgagacggagcacccggagctgcgcacc
ccggactccccgacgcagcacgtcggtgccgcggcctcgacgacgttcgacccggtcgac
cacgtcgagcgcatgctctcgctcgacaacgcgttcaacgccgacgagctcgcggcgtgg
gccgagcgcgtgcaccgcgagctcgagctgcccgcggagcgcacggtcgactacctgtgc
gaggtcaagatcgacgggctcgccatcgcgctgctctacgagcgcgggcggctcgtgcgg
gccgcgacccgtggcgacgggcgcacgggggaggacgtcacggccaacgtgcgcacggtc
gaagggatcccgcacacgctcgcgggcgatccgtccacgcacccgcaccgcatcgaggtg
cgcggcgagatcttcatgctggtcgacggcttcgcggcgctgaacgaggctcaggtcgca
gccggcaaggcgcccttcgcgaacccgcgcaacgccgcggcggggtccctgcggcagaag
gacccgacgatcaccgcggggcgacccctgcgcatgtacgcgcacggggtcggcgccctg
gagtgggagcagggtaggcccacgaagctcgaacggcagtcggatgcgtacgcgctgctc
gagggctggggcgtaccgatctcgccgcacaaccgggtggtcgacggtctcgcgggcgtc
caggagcgtatcgaccacttcggggagcaccggcacgacatcgagcacgagctcgacggg
atcgtcgtcaaggtcgacgagctcgcgctgcagcgtcggctcggcgcgacgagccgcgcc
ccgcggtgggctatcgcgtacaagtacccacccgaggaggtcaacacgacgctcctcgac
atccgcgtcaacgtcggccgcacgggccgcgtgacgccgtacggggtcatgcagccggtg
ctcgtcgccgggtccacggtcgagatggccacgctccacaacgcgagcgaggtggcgcgc
aagggcgtgctgatcggtgacaccgtggtgctgcgcaaggcgggggacgtgatcccggag
atcctgggcccggtcgtggcgctgcgcgacgggtcggagcgcgccttcgtgatgccgacc
gagtgcccgtcctgcgggacgacgctcgcgcccgcgaaggagggcgacgtcgacatccgt
tgccccaacgcggagtcgtgcccggcgcagatccgcgagcggctcttccacgtcgcggga
cgcggggcgttcgacatcgaggcgctgggctgggaggccgcgggcgcgctgaccgacccg
gaggccggtcgacccgacgacccgtcggtgtaccggccgtccggcaaggaggacgaggtc
gcgcccgacgccctgccgccgcgccaggtgcctgtcctggcgaacgaggccggtctcttc
gacctcgcacccggcgacctgcgggacgtgcggacgtggcgggagatccggcgtcgggtc
gaccccgccgcccccggagcggccggtcgcaagacggagggcacggggctgtggacggac
cggcactacttctggaccgtcagcgacaaggagggtccgcggccgtccgcgaacacggac
acgctcttcgccgagctggagaaggccaaggcgcagccgctgtggcgggtgctggtggcg
ctgtcgatccggcacgtcgggccgacggcggcgcgcgccctcgcccagcacttcggctcg
atcgacgcgatccagaccgcggcggcggccgacgacgaggcgtcgcagctcgcggcggtc
gacggggtcgggccgaccatcgcacgcgccgtcaaggagtggttcggggacccggacgag
ggcggctggcggcgcgggatcgtcgacgcctgggcggcggccggggtccgcaccgaggac
gagcgcgacgagtccgtcgtgcggaccctcgagggcctgaccgtcgtggtgaccggctcg
ctcgagggctactcgcgcgacggtgcgaaggaggcgatcctcgctcgcggcggcaaggcg
gcggggtcggtgtcgaagaagaccgacttcgtcgtggtgggggagaacgcgggatcgaag
gagacgaaggcgcgcgaactcggtctgcggatcctcgacgaggcggggttcacggcgctg
ctcgagggcggtcaggacgcggtgaccgagtccgcgtcctag
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