Pseudomonas sp. StFLB209: PSCI_3635
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Entry
PSCI_3635 CDS
T03623
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses03030
DNA replication
pses03410
Base excision repair
pses03420
Nucleotide excision repair
pses03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSCI_3635 (ligA)
03410 Base excision repair
PSCI_3635 (ligA)
03420 Nucleotide excision repair
PSCI_3635 (ligA)
03430 Mismatch repair
PSCI_3635 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pses03032
]
PSCI_3635 (ligA)
03400 DNA repair and recombination proteins [BR:
pses03400
]
PSCI_3635 (ligA)
Enzymes [BR:
pses01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSCI_3635 (ligA)
DNA replication proteins [BR:
pses03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSCI_3635 (ligA)
DNA repair and recombination proteins [BR:
pses03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSCI_3635 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSCI_3635 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSCI_3635 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSCI_3635 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
BAP44337
LinkDB
All DBs
Position
4089041..4091401
Genome browser
AA seq
786 aa
AA seq
DB search
MKAVETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEADHPHLVTPDSPTQ
RVGSAALSAFSQVRHELPMLSLGNAFEETDLLDFNRRVAEGLDLPAGDLFGGGAKVQYSC
EPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTIRNVPLKLHGTGWPELLEVRG
EVFMSKAGFEKLNASQAEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVTA
DISDTHVGVLEQLKTWGLPVSRELKLADGVEQCLEYYRDIGERRLTLPYEIDGVVFKVNN
LGYQRELGFRAREPRWAIAHKFPALEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVQVVTERRPEDARPVAVPEACPVCGS
HVERTQLVKRSKGKETLSEGAVYRCIGRLACGAQLKQAIIHYVSRRAMDIDGLGDKTIEQ
LVDEKLIGSPADLYALKYEQIIDLEGFAEVSTNKLLKAIDDSRQPPLARFIYALGIPDVG
EETAKVLARSLGALARVRQALPQVLTYLPDIGLEVAHEIHNFFEDQHNRNVIDALLGERG
LKLQDEVELSADFAASATLGSLLDKLHIPFVGPGGAQKLAERFGSLDGVLQADWLDMRQA
LPEKQANSVREFFANQDNVKRAQEIEAQLKDFGMHWQSEKKVAEGLPLAGQTWVLTGTLE
RMSRDIAKDKLESLGAKVSGSVSGKTHTVVAGPGAGSKLTKANELGVKVLDEDAFVEFLA
GQGISV
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcagtcgagacccgaatcctggaactgcgtgcagagctggatcagcacaactac
cgctatcacgtgctggacgagccgagcatcccggacgccgaatacgaccgactgtttcat
gaactcaaggcgctggaggccgaccacccgcatctggtgaccccggattcgcccacccag
cgggtcggcagtgctgccctgagcgcgttcagccaggtccgtcatgagctgccgatgctc
agcctgggcaatgcctttgaagaaaccgacctgctggacttcaaccggcgggtcgccgaa
gggctggatttgccggccggcgatctgtttggtggcggcgccaaggtgcagtacagctgc
gaacccaagctcgatggtctggcggtcagcctgctgtaccgtgatggtgcactggtgcgc
ggcgcgacccgtggggacggcacgaccggtgaagacatcagtgtcaacgtacggaccatt
cgcaacgtgccgctcaagttgcacggcacgggctggcctgagctgcttgaagtgcgcggt
gaagtgttcatgtccaaggccggtttcgaaaaactcaatgccagccaggcagaagtgggt
ggcaagacctttgccaacccgcgtaacgcggcggctggcagcctgcggcagctggattcg
aagatcactgccagtcgtccgctggagttctgctgttatgggctgggccaggtcactgca
gatatttccgacacgcatgtaggtgtacttgagcaacttaaaacctgggggttgccggtc
agccgcgaattgaaactggctgatggcgttgagcaatgtcttgagtactaccgtgatatc
ggcgagcggcgtttaaccctgccctatgaaatcgacggcgtggtattcaaggtcaataac
ctgggttatcagcgtgaacttggctttcgtgcccgtgaaccgcgctgggccattgctcac
aaattcccggccctcgaagagctgaccgaactgctggatgtggaatttcaggtcggccgc
accggcgcagtcacgcctgtagcacgcctcaagccggtcaaggtggcaggggtcacggtg
tccaacgccacgctgcacaacatggatgaagtggcccgtctgggggtgatgattggcgac
accgtgattatccgccgggccggtgacgtgattccgcaggtggtacaagtggtcaccgag
cggcgccccgaggacgcccggccggtcgcagtgccagaagcctgcccggtgtgtggctcg
catgtcgagcgcacccagctggtcaagcgcagcaagggcaaggaaaccctcagtgaaggc
gcggtgtatcgctgtattggccgtctggcctgcggtgcacagctcaaacaggccatcatc
cattacgtatcgcgccgcgccatggatatcgacgggctgggcgacaagaccatcgagcaa
ctggtcgatgaaaaactcatcggctcgccagcggacctgtacgcactcaagtacgagcag
atcatcgacctggaaggctttgccgaggtgtcgaccaacaagctgctcaaggccattgac
gacagccggcagccgccgctggcccgctttatctacgcgttgggcatcccggatgtcggt
gaagagaccgccaaggttctggcccgctcgctgggcgcgctggcgcgggtcaggcaggcc
ttgccacaagtgctcacctacctgccggacatcggcctggaagtggcccacgagatccac
aacttcttcgaagaccagcacaaccgcaacgtcatcgacgccttactgggcgagcggggc
ctgaagctgcaggacgaagtcgaactgagcgcggacttcgccgccagtgcgaccctgggc
agcctgctcgacaagctgcacatcccgtttgtagggccgggcggtgcgcagaagctggcc
gagcgtttcggctcgctggacggcgtgctgcaggccgactggctggacatgcgccaggct
ttgccagagaaacaggccaactcggtgcgtgagttctttgccaatcaagacaacgttaaa
cgcgcccaagagatcgaagcccagctcaaggacttcggcatgcactggcaaagcgaaaag
aaagtggccgaaggcttgccgctggccggtcagacctgggtgctgaccggcacgctggag
cgcatgagccgcgacatcgccaaagacaaactggaaagcctcggtgccaaggtctcaggc
tcagtatcgggcaagacccacaccgtcgtcgctggccccggtgccggctccaagctgacc
aaggccaatgagctgggggtcaaggtgctggatgaagatgctttcgtcgagtttctggcc
gggcagggcatcagcgtctga
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