Pseudoclavibacter triregionum: USB125703_00816
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Entry
USB125703_00816 CDS
T07344
Symbol
yodJ_1
Name
(GenBank) Putative carboxypeptidase YodJ
KO
K07260
zinc D-Ala-D-Ala carboxypeptidase [EC:
3.4.17.14
]
Organism
psev
Pseudoclavibacter triregionum
Pathway
psev00550
Peptidoglycan biosynthesis
psev01100
Metabolic pathways
psev01502
Vancomycin resistance
psev02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psev00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
USB125703_00816 (yodJ_1)
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
USB125703_00816 (yodJ_1)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
USB125703_00816 (yodJ_1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
psev01002
]
USB125703_00816 (yodJ_1)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
psev01011
]
USB125703_00816 (yodJ_1)
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
psev01504
]
USB125703_00816 (yodJ_1)
Enzymes [BR:
psev01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.17 Metallocarboxypeptidases
3.4.17.14 zinc D-Ala-D-Ala carboxypeptidase
USB125703_00816 (yodJ_1)
Peptidases and inhibitors [BR:
psev01002
]
Metallo peptidases
Family M15: zinc D-Ala-D-Ala carboxypeptidase family
USB125703_00816 (yodJ_1)
Peptidoglycan biosynthesis and degradation proteins [BR:
psev01011
]
Peptidoglycan biosynthesis and degradation
Carboxypeptidase
USB125703_00816 (yodJ_1)
Antimicrobial resistance genes [BR:
psev01504
]
Gene sets
Vancomycin resistance modules
Vancomycin resistance, D-Ala-D-Lac type [MD:
M00651
]
USB125703_00816 (yodJ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VanY
Motif
Other DBs
NCBI-ProteinID:
CAG7844580
LinkDB
All DBs
Position
1:912643..913944
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AA seq
433 aa
AA seq
DB search
MTDGRERETEPEGVEPLTAEYVEPDIYADVDLEVPRPASRRTNAAPSGRTAGTAAAGAAA
STGAAAGAAASRPAADAARASSAAKPTTSGTASSKPASSKSASSADRTVPPVPRPDADAD
ARTPGRAVPLAASATAARTAAPGAARRRLLVAGVLLVLAGLLAWLLLPRLFGQGQGQETG
WQQSTATPSVQAPGSTQAPASTEGAAASQAPAESGAAASTSAPGTGSASNPAGLDIASAS
SLQVLVNKHHPLSPQDYAPDDLVAMSDIGVSSANGHSLRHDAAMAVKDMFAAAAQDGLEL
DMTSGYRDFELQTSLYDRYVDQLGQAGADATSARPGFSEHQTGLAADISTVGGACPLEGC
YAEQPGGQWLAANAWKYGFILRYPDGQTGTTGYEFEPWHYRYIGPEAAAAYHASGAATYE
EFLGSDAAPDYKG
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacggacgcgagcgcgagaccgagcccgagggcgtcgagcccctcacggccgag
tacgtcgagccggacatctacgcggacgtcgacctcgaggtgccccgccccgcgagccgc
cgcacgaacgcggccccgagcgggcggaccgccgggacggccgccgccggcgccgccgcg
agcactggggccgccgcgggcgccgcggcctcgcgccccgccgccgacgcggctcgcgcg
tcctccgccgcgaagccgaccacatcgggcacggcctcctcgaagcccgcctcctcgaag
tccgcctcctccgccgaccgcaccgtcccgcccgtcccgcgccccgatgccgatgccgac
gcgcgcacccccggccgcgccgtgcccctcgccgcctcggcgaccgccgcccgcaccgcc
gcccccggcgccgcgcgccgacgcctcctcgtcgcgggcgtcctcctcgtgctcgcgggc
ctgctcgcctggctcctcctcccgcgcctcttcggccaggggcagggccaggagacggga
tggcagcagtccacggccacgccgagcgtccaggcacccggatcgacgcaggccccggcc
tcgaccgagggcgcggccgcctcgcaggcccccgcggagtcgggcgccgcggcgagcacg
agcgcgcccggcacgggatccgcctcgaaccccgccggcctcgacatcgcgagcgcctcg
agcctccaggtgctcgtgaacaagcaccacccgctctcgccgcaggactacgcgccggac
gacctcgtcgcgatgagcgacatcggcgtctcctccgcgaacgggcactcgctccggcac
gacgccgcgatggccgtgaaggacatgttcgccgccgccgcgcaggacggcctcgagctc
gacatgacgagcggctaccgcgacttcgagctgcagacgagcctctacgaccggtacgtc
gaccagctcgggcaggccggcgccgacgcgacctccgcgcgccccggattcagcgagcac
cagacgggcctcgcggccgacatctcgacggtcggcggcgcctgcccgctcgagggctgc
tacgccgagcagccgggcggccagtggctcgccgcgaacgcctggaagtacggcttcatc
ctccgctacccggacggccagaccggcacgaccggctacgagttcgagccgtggcactac
cgctacatcgggcccgaggccgccgcggcgtaccacgcctccggcgcggcgacgtacgag
gagttcctcggctcggacgcggcgccggactacaagggctag
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