KEGG   Pseudoclavibacter triregionum: USB125703_00976
Entry
USB125703_00976   CDS       T07344                                 
Symbol
casD
Name
(GenBank) CRISPR system Cascade subunit CasD
  KO
K19125  CRISPR system Cascade subunit CasD
Organism
psev  Pseudoclavibacter triregionum
Brite
KEGG Orthology (KO) [BR:psev00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:psev02048]
    USB125703_00976 (casD)
Prokaryotic defense system [BR:psev02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Subtype I-E factors
    USB125703_00976 (casD)
SSDB
Motif
Pfam: Cas_Cas5d
Other DBs
NCBI-ProteinID: CAG7844729
LinkDB
Position
1:complement(1080170..1080868)
AA seq 232 aa
MPVLLLELAAPWQAWGSESRFTRRATEPMPTKSGVVGLLAAAEGRRRTDPVEDLVKLRFG
VRADQVGVSQTDFQTAIDWRTGESKPLSHRAYLSDARFLVALEGGRELLDGLAEAIRRPT
FPLYLGRRSCPASGRIVRGVKEASLEEALRTEPWLAAEWYRRRQPRAASLAISRDARLDE
AADERLHDVPVSFDPRRRDYAWRSVRHEWVRVDNPSGLDPAGHDPFSLLGGG
NT seq 699 nt   +upstreamnt  +downstreamnt
atgccggtcctcctgctcgagctcgccgcgccgtggcaggcgtggggaagcgagagccga
ttcacgcgccgggcgaccgagccgatgccgacgaagagcggcgtggtgggcctgctcgcc
gccgccgagggccgtcggcgtacggatcccgtcgaggatctcgtgaagctccggttcggc
gtccgcgcggaccaggtcggcgtgagccagaccgatttccagacggccatcgactggcgg
accggcgagtcgaagccgctctcccaccgggcctatctctccgacgcgaggttcctcgtg
gccctcgagggcggacgggagctcctcgacgggctcgccgaggcgatccgtcgccccacc
ttcccgctctacctcggtcgccgatcgtgcccggcatccggccggatcgtacgcggagtg
aaggaggcctccctcgaggaggcgcttcgcacggagccgtggctcgccgccgagtggtat
cgacggcggcagccgcgggcggcatcgctggcgatctcgcgagatgcccgactcgacgag
gccgccgatgagcggctccacgacgtccccgtgtccttcgatccgcgccggcgcgactac
gcctggaggtcggtgcgacatgagtgggtacgcgtcgacaacccgtcggggctcgatcca
gccggacacgatccgttctcgctgctaggaggaggctga

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