Polypterus senegalus (gray bichir): 120517250
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Entry
120517250 CDS
T08668
Symbol
scn4ab
Name
(RefSeq) sodium channel protein type 4 subunit alpha B
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psex04040
]
120517250 (scn4ab)
Ion channels [BR:
psex04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
120517250 (scn4ab)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Syntaxin-5_N
IQ
Motif
Other DBs
NCBI-GeneID:
120517250
NCBI-ProteinID:
XP_039595386
LinkDB
All DBs
Position
17:complement(3964889..4065242)
Genome browser
AA seq
1899 aa
AA seq
DB search
MDPNKMRSTFLLQIWKQNKVFQKECKKRLKNYHDQIQRLLRRRKTGEPLLVQNEKMAPLL
IPTGPDVFRRFTSESLAEIEKRILKEKAEKDRRQHYEISEEDLPKPNSDLEAGKPLPFIY
GDPPPNVLTEPLEDLDPFYNTQKTFIVLSKGKAIYRFNAEPACYILSPFNPIRRAAIKIL
IHSLFSMFIMITILTNCVFMAMSDPPSWSKNVEYAFTGIYTFEALVKILARGFCIGGFTF
LKDPWNWLDFSVITMAYTTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQSVK
KLSDVMILTVFCLAVFALIGLQLFMGNLRHKCVRWPISFENMTMAYNETSFSFNETSGNF
NGTDNSWFDWDEYINDDGNYYFLEGAADALLCGNSSDAGQCPEGFMCMKAGRNPNYGYTS
YDTFGWAFLSLFRLMTQDYWENLFQLTLRAAGKTYMIFFVIIIFLGSFYLINLILAVVAM
AYAEQNEATMEEARQKEEEFQQILEQLKKQDAQLHGPAKAHGNSQDSLAGNQVKKKKGDS
EHADTDQEGDQIGDCNGKVIPKVVIERVNSVQAESVEEVVKHNQPYSKQNMDYLEDPGLQ
KRTASAMSVLTNAMEELEETQQKCPPWWYKFAHMFLIWDCCTLWIKFKEAVKFVVMDPFV
DLGITICIVLNTLFMAMEHYPMTEQFESVLATGNLVFTGIFAAEMVFKIIALDPYYYFQT
GWNIFDSIIVTLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGAL
GNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKINESCELPRWHMNDFFHSFLIVFRILCG
EWIETMWDCMEVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLSSKDDDGEMN
NLQIAIGRITRGIDFVKGGILGLFRTILGKKKAQAEEDESDKKEQFVLNHMDLPEEAKSD
LKIVDGVTKKEAHMMDDLDRSGFLTNVDMRLTAPIAPGESDFEKDDDEISLEIKEPKRHT
IIDGSSYSTADYKPPEIEEEMALEEAADSEEPQPCFTEGCIRRCPCLTVDITQGKGKQWW
NLRKACFCIVEHNWFETFIIFMILLSSGALAFEDIYIEQRQMIKIILEYADKVFTYVFVI
EMLLKWTAYGFKTYFTNAWCWLDFLIVDVSLISLTANLMGYSELGPIKSLRTLRALRPLR
ALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYRCINTTSEELF
PISVVNNKSECLAIPGETRWMNLKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRQVE
EQPSYEINLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPQNKIQGAVYDFVNKQAFDIFIMVLICLNMVTMMVETDDQSAE
KELILFYINLVFIVIFTGECILKLFALRHYFFTIGWNIFDFVVVILSILGIMLADIIEKY
FVSPTLFRVIRLARIGRVLRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFG
MSNFAYVKKESGIDDIFNFETFGNSIICLFQITTSAGWDGLLNPILNSGPPDCDPTFENP
GSEVKGNCGNPAVGIVFFCSYIIISFLIVVNMYIAIILENFNVATEESGEPLCEDDFEMF
YETWEKFDPDASQFIEYCRLSDFCNTLQDPLKIPKPNKIKLITLDLPMVVGDKIHCLDIL
FALTKEVLGDSGEMDTLKATMEEKFMAANPSKVSYEPITTTLKRKQEEVAASVIQRAYRR
HLLKRSVKQASYMFRHIGNGENKTVEEAPEKEGLIAEKMEEHYGKEDHRRKEESETKESS
KSENTLDVPHMPDVVVPLSEPRTAALPSIIKRNIRESVV
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atggaccccaacaaaatgagaagtacattcctcttgcagatttggaagcagaacaaagtg
ttccaaaaagagtgcaagaagcgacttaagaattatcatgaccaaattcagcgtttactg
cgaaggcggaagacaggggaaccacttttggtgcagaatgagaagatggcacccttgctc
attccaacaggccctgatgtttttcgtcgcttcacttcagagtccttggcagagattgag
aaacgcatcctcaaagaaaaggctgaaaaagacagacggcagcattatgaaatctcggaa
gaagaccttcccaagccaaacagtgatctagaggctggaaaaccactgcctttcatatat
ggtgatcctccacccaatgtccttactgaacctttagaggacctggacccattctacaat
acacagaaaacttttatagtcttaagtaaagggaaggcaatctacaggtttaacgctgag
ccggcctgctatattttgagtcccttcaatccaattcggagggctgccatcaaaattctt
atacattcattatttagcatgttcatcatgatcacaattctaacaaattgtgtgtttatg
gcgatgagtgacccaccatcttggagcaaaaatgtagagtatgctttcactggaatttat
acttttgaagcattggtcaagattttagctaggggcttttgcattggtggtttcacattc
ctgaaagatccttggaactggcttgactttagcgtcatcaccatggcttacactactgag
tttgtagatttgggcaacgtctcagctctccgaactttccgtgtgcttcgagctctgaaa
acaattactgttattcctggtttgaaaaccattgtgggcgcactcatccaatcggtgaag
aaactgtctgatgtgatgatcctcaccgtcttctgtctggcagtctttgccctcattggc
ctgcaactcttcatgggtaacctgaggcacaagtgtgttaggtggcccatttcttttgaa
aatatgaccatggcctacaatgagacgtctttcagtttcaatgagacatctgggaatttc
aatggaacagacaacagctggtttgactgggacgaatacattaatgatgacggtaactat
tactttctagagggggccgcagatgccttactgtgtggtaacagctcagatgctggacag
tgcccagaaggattcatgtgcatgaaagcaggaaggaacccaaactacggttacaccagc
tatgacactttcggttgggcttttctttctttattcagactaatgactcaagattactgg
gagaatcttttccagctgaccctaagggctgctggcaaaacctacatgatattctttgtg
ataattatcttcttgggctctttttacttgataaacttgattctggctgtggtggccatg
gcctacgcagaacagaatgaggccacaatggaggaagcaagacaaaaagaggaagagttt
cagcaaatattggagcaactgaagaagcaggacgcacaactgcatggaccagccaaggcc
catggaaacagccaggactcactagctggaaatcaagtaaagaagaaaaagggcgactcc
gaacatgctgatactgatcaagaaggggaccaaatcggagactgcaatggaaaagtcata
ccaaaggtggtcattgagcgagtcaactctgtacaagctgagtcagttgaggaagttgtg
aaacacaatcagccttactccaaacaaaatatggattacttggaggatccaggtcttcag
aaaagaactgcaagtgcaatgagtgtgcttactaatgccatggaagagctggaagagacg
cagcagaagtgtcctccttggtggtataaatttgcgcacatgttcctgatctgggattgc
tgtaccctgtggataaaatttaaagaagctgtgaaatttgtggtcatggacccttttgtg
gaccttggcatcaccatatgcattgttctgaataccctttttatggctatggagcattac
cctatgacagagcagtttgaaagtgtcttggcaacgggaaacctggtgttcactggcatc
ttcgctgctgagatggtgttcaaaatcattgctcttgatccatattattactttcaaact
ggatggaacatctttgatagcattattgtcactctcagtctggtggaactgggacttgcc
aatgtggaaggcctgtctgtcctccgatccttccgtttgcttcgtgtgtttaagttggcc
aaatcttggcccacactgaacatgttgatcaagatcattggaaactcagttggagctctc
ggtaacctgacattggtcttggccatcatcgttttcatatttgcggtggtggggatgcag
ctctttggcaaatcttacaaggattgtgtttgtaagatcaatgaaagttgtgaactacct
cgctggcacatgaatgattttttccactctttcttgattgtctttcgcatcctatgtgga
gaatggattgaaactatgtgggactgcatggaagtagctggacaaacaatgtgtctcatt
gtcttcatgatggtcatggttattggaaaccttgtggtgcttaacctctttttagccttg
ctgctaagctcctttagtgcggacaatctctccagcaaagatgacgatggtgaaatgaat
aacctccagatcgccattggcaggattacacgtggcattgattttgtcaaaggaggcatt
ttgggtctgttccgaacaattcttgggaagaagaaagcacaagctgaagaagatgaaagt
gacaaaaaagaacagtttgttcttaaccacatggatttaccagaggaagctaagtcagat
cttaagattgtggatggtgtcacaaagaaagaagctcacatgatggatgatttggatcgc
tctggatttctgaccaatgtagatatgagactcactgctcccattgcacctggagagtct
gattttgaaaaagatgacgatgagattagtttagaaattaaagaacccaaaagacacaca
ataattgatgggagctcctacagcactgctgattacaagccaccagagattgaggaggag
atggcattggaagaagcagcagacagtgaagaaccacagccttgcttcacagaaggctgt
atccggcgatgtccctgtctcacagttgatattacgcaaggcaaaggaaaacagtggtgg
aatttgaggaaagcatgcttttgcattgtggagcacaactggtttgagacgtttatcatc
ttcatgattttgctgagtagtggtgccctggcatttgaagatatatacattgaacaaagg
caaatgataaaaataatcttggagtatgcagacaaagtgtttacctatgtattcgtgatt
gaaatgcttttaaagtggaccgcctatggatttaagacctatttcaccaatgcatggtgt
tggctagatttccttattgtggatgtttctttgatcagccttacagcaaacttaatgggg
tattctgaactgggacccatcaaatccctgcggacactccgagccttgaggcccttaaga
gcactgtcacgatttgaaggaatgagggtagtggtcaacgcccttttgggagcaattcca
tctattatgaatgtcctgctggtctgtctgatcttttggttaatcttcagcataatggga
gtaaatttgtttgctgggaagttctacaggtgcatcaacaccacatcagaggagctgttt
cccatatctgtggtcaacaacaagtcagaatgcttggcgattccaggggaaaccagatgg
atgaatttgaaagtcaattttgataatgtgggtctaggctacttgtccctgttgcaggtg
gccacgtttaaaggctggatggacattatgtatgctgcagtagattcacgccaggtggaa
gaacagccttcatatgaaatcaatctgtacatgtacatatactttgtcatctttattatt
tttggagcttttttcacccttaatcttttcattggtgtcattattgacaacttcaatcag
caaaagaaaaagtttggaggtaaggatatcttcatgactgaagaacagaaaaaatactat
aacgctatgaagaagcttggttccaagaaaccacagaagcctatcccaaggccacagaat
aaaatccaaggagctgtgtatgattttgtcaataagcaagcttttgatatttttattatg
gtcctcatttgcctcaacatggtgacaatgatggtggagacagatgaccagagcgcagag
aaagaattaattcttttctatatcaacttggtcttcatcgtgattttcactggagagtgt
atccttaaactttttgctctcagacactatttctttaccattggatggaacatttttgat
tttgttgtggtcatcctttctattcttggcataatgttagcagacatcattgaaaagtat
tttgtctcacctactcttttccgagttataagactggccagaattggccgcgttctcagg
cttattaaaggtgcaaagggaatccggacccttctttttgcactgatgatgtcccttcct
gctttgttcaacatcggtttgctgcttttcctcgtgatgtttatttactccatctttgga
atgtcaaactttgcttatgtgaaaaaagagtcaggcattgatgacatatttaactttgag
acctttgggaatagcatcatttgcttgtttcagatcaccacttcagctggttgggatggt
ctccttaaccctatattgaacagtggcccaccagactgtgatccaacttttgaaaatcct
ggttcagaagttaagggcaactgtggcaatcctgctgtgggcatagttttcttctgcagc
tacatcattatctctttcctaattgtagtcaacatgtacattgccatcatcctggaaaac
ttcaatgttgccacagaagaaagtggtgagccactatgtgaagatgactttgaaatgttc
tatgaaacatgggagaaatttgatcctgatgcttctcagtttatagaatactgtcggctc
tctgatttctgtaatactcttcaagaccctcttaagataccaaaacctaacaaaatcaaa
ctcataactttggacctcccaatggttgtaggtgacaaaattcactgccttgatatcctc
tttgctcttactaaagaagtgctgggagactctggggaaatggataccctgaaagcaacc
atggaagaaaagttcatggctgccaatccttccaaagtttcctatgaacccatcaccaca
accctgaagaggaaacaggaggaggtggctgcttcagtcatccagcgagcttacaggagg
cacctgcttaagcgatcagtgaagcaggcttcatacatgttccggcatattggaaatggg
gaaaacaaaacagtagaagaagctccagaaaaagagggcttgattgctgagaagatggag
gagcactatggaaaagaggatcacaggaggaaagaagagagtgagactaaggagtcttct
aaatcggaaaacaccttagatgttcctcacatgcctgatgttgttgttccactctctgaa
ccacgcacagctgctttaccctccatcatcaaaagaaatatacgggaatctgtcgtataa
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