Polypterus senegalus (gray bichir): 120518283
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Entry
120518283 CDS
T08668
Symbol
traf3
Name
(RefSeq) TNF receptor-associated factor 3
KO
K03174
TNF receptor-associated factor 3
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04620
Toll-like receptor signaling pathway
psex04621
NOD-like receptor signaling pathway
psex04622
RIG-I-like receptor signaling pathway
psex05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
120518283 (traf3)
04621 NOD-like receptor signaling pathway
120518283 (traf3)
04622 RIG-I-like receptor signaling pathway
120518283 (traf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120518283 (traf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
zf-C3HC4
zf-TRAF_2
ATG16
Sina_ZnF
ATG17_like
zf-C3HC4_2
MG280
CCDC22_CC
Fez1
MAD
Fib_alpha
AIP3
Occludin_ELL
DUF1664
EzrA
AAA_13
T3SSipB
MscS_porin
Crescentin
BLOC1_2
Mis12
ADIP
CHASE3
PIN_12
USP8_interact
Exonuc_VII_L
DUF7310
LpxB
DUF724
TMF_TATA_bd
ERM_helical
FapA
KH_DEAH11
UPF0242
YscO
IFT57
Seryl_tRNA_N
KIF9
Spc7
DUF3450
Phage_Gp23
TMPIT
Sipho_Gp157
DUF2203
Snapin_Pallidin
ECH_2
AKNA
DUF16
COG4_N
Motif
Other DBs
NCBI-GeneID:
120518283
NCBI-ProteinID:
XP_039596907
LinkDB
All DBs
Position
18:28970272..29027316
Genome browser
AA seq
578 aa
AA seq
DB search
MSGRNVEVPQELQIPVQQRSSPSQPSLPSRITPLWPDQSLSSPSFLPPHGGFRDYFVLPL
EPKYCCESCHLALCNPKQTECGHRFCESCVRDLLREATPTCPVDGGPLFEDKIFKDVCCG
REIMGLRVFCRNERNGCKEQMTLQQLLEHLQDCPYYELPCPRAECKEKLLRKDVPDHLAK
RCKYRDTICPHCKKTVLLADLKKHEETVCPAFPVSCPNKCSYPSVLRSELTSHQHECPNA
QVNCMFSRYGCSFKGLNQELKLHEATCMAEHLRLMLAGNFTLEKKMEDIKSELHERYLVL
PSLNSRVTEIENRYEELRDKTKQMEQKISNIQKLLSSHSEKMREMDAELRLLRQTKDEVD
ALKNTVETIRNRVAVLEGGSRGNFAPVPHTLESLVSRHDDMLSVHEIRLADMDLRFQVLE
TASYNGTLIWKIRDYKRRKQEAVAGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTH
LSLFFVVMRGEYDALLTWPFKQKVTLMLMDQGPTRKHLCDAFKPDPNSSSFKRPVGDMNI
ASGCPLFVSQPVLENGSYIKDDTIFIKVVVDTSDLPDP
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtcgaaatgtggaagtgcctcaggaactgcagattcccgtacaacagagatcg
tccccaagtcaaccctctctcccaagccggatcactccattatggcctgatcagagcctt
tcttctccatccttcttacctccacatggtggcttcagggactactttgtgttgcctctg
gaacccaagtactgttgtgaatcttgccatctagccctttgcaaccctaagcagacagaa
tgtggtcaccgcttctgtgagtcctgtgtccgggacctcctccgggaagcaaccccaacc
tgtcctgttgatggtggacctttatttgaagacaagatctttaaagatgtctgctgcggt
agggagattatgggtctccgagttttctgcagaaacgaaaggaatggctgcaaagaacag
atgacattgcagcaactattagaacacttgcaggactgcccctattatgagctgccttgc
ccccgagcagagtgcaaagaaaagcttctacgcaaggatgtgccggaccacttagccaaa
cggtgcaaatacagggacaccatatgtcctcactgtaagaaaactgttcttctagcagac
ctgaaaaaacatgaagaaacagtttgtccagcttttcctgtttcctgtcctaacaagtgc
agttatccttctgttttaagaagcgagctaacaagccaccaacatgaatgccccaatgct
caagtaaactgtatgtttagccgctatgggtgcagcttcaagggcttgaatcaagagttg
aaactccatgaagccacatgcatggcagagcacctacgactgatgctagctggcaacttt
acattggagaaaaagatggaggatattaaaagtgaactgcatgagagatacctggtgctg
ccatctctgaacagtcgagtcactgaaatagagaaccggtatgaagagctgcgagataag
accaagcagatggaacagaagatcagcaacatacagaaactgctgagttcccactctgag
aagatgcgcgagatggacgctgagctacggctgttgaggcagaccaaagacgaagtagat
gcactcaagaacacagtggagacaatccgcaatcgagtagcagtcctagaagggggcagc
agagggaattttgcccctgtgccacatactctagagtcgctcgtctccagacatgacgac
atgttgagtgttcacgagatcaggctggccgacatggacctgcgcttccaggtgttggag
acggcgagttacaacgggaccttaatctggaagatcagggactacaagcggcggaagcag
gaggccgtcgcagggaagactctgtcactgtacagccaacccttctacactggctacttt
ggttataagatgtgtgccagggtctacctcaatggggatggcatgggcaaaggcacacac
ctctccctgttttttgtagtgatgcgcggggagtatgacgctttattgacgtggcccttc
aaacagaaagtcaccctcatgctgatggatcagggccctacccgcaagcacctatgtgac
gcctttaagccagacccaaacagcagtagcttcaagagaccggtgggtgacatgaacatt
gcatctgggtgcccgctgtttgtttctcagccagtgctggagaatggctcatacattaaa
gacgacaccatatttattaaagtagttgttgacacttcagacttgccagatccttga
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