Polypterus senegalus (gray bichir): 120518968 Help Entry 120518968         CDS       T08668                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism psex  Polypterus senegalus (gray bichir) Pathway psex04115   p53 signaling pathway psex04145   Phagosome psex04148   Efferocytosis psex04350   TGF-beta signaling pathway psex04510   Focal adhesion psex04512   ECM-receptor interaction psex04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:psex00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     120518968 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120518968 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     120518968 (thbs1b)    04148 Efferocytosis     120518968 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     120518968 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     120518968 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     120518968 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:psex04131]     120518968 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:psex00536]     120518968 (thbs1b) Membrane trafficking [BR:psex04131]  Endocytosis   Phagocytosis    Opsonins     120518968 (thbs1b) Glycosaminoglycan binding proteins [BR:psex00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120518968 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C TSP1_ADAMTS EGF_3 cEGF EGF Laminin_G_3 TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  120518968 NCBI-ProteinID:  XP_039597949 LinkDB All DBs Position 18:66491552..66511863 Genome browser AA seq 1170 aa AA seqDB search MSLSEGLFLLFMLVFCEGARVAESGDDNGVFDLFEITRVSRKNHGVALVKGLDPNSPAYK TLNPNLIPPVPEGTFRDLLEDIRAERGFIFMATFKQAKKTRGSLLSVEKTDGTGQVFEIV SNGKAETLDIVYSTENKQQVVSLENARFATGQWVNITLFIQEDWAQLYLGCDKVDTAEMD VSIQQILSQDLPSFARLRVAKGAITNFLGVLQNVRFVFGTTLEAILRNKGCARSLTDTIT LDNPVNGSSPAIRTDFIGHKAKDIQNVCGFSCDELATMFKELQGLRVVVNQLADNIHKLT KENELIQKKFNFESGSCIHNGVFHKERDEWKVDNCTECTCQNSAIVCHEISCPLMPCTNA TVPDGECCPRCGTLSDSPEDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINNNCEGTSVQT RDCYIQECDKRFKQDGQWSHWSPWSSCSVSCGSGVITRIRLCNSPTPQMGGKECEGEGRQ TEKCQKDPCPINGKWGPWSLWDTCTVTCGGGIQRRTRLCNDPAPKYGGKECIGEPAETQL CNKKDCPIDGCLSNPCFAGTQCTSFPDGSWKCGSCPTGYHGNGIHCTDIDECTEVPDACF VSNGVHRCENTEPGYNCLPCPPRFTGSQPFGRGVEDATSKKQVCKPRNPCNDGTHDCNKN ARCIYLGHYTDPMFRCECKPGFAGNGYICGEDTDLDGWPNEDLECVENATYHCKKDNCPN LPNSGQEDFDKDGTGDACDSDDDNDSVPDDRDNCQFIYNPRQYDYDRDDVGDRCDNCPYN HNPDQVDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDQCDNCPLEH NPDQIDSDSDLVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDDN DGIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDKVPDIYDVCPENFDISETDFRKF QMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDRDD DYAGFVFGYQSSARFYVVMWKQITQTYWSDTPTKAQGYSGLSIKVVNSTTGPGEHLRNAL WHTGDTTGQVRTLWHDPRNIGWKDFTAYRWHLTHRPKTGHIRVVMYEGKKIMADSGSIYD KTYAGGRLGLFVFSQEMVYFSDLKYECRDT NT seq 3513 nt NT seq  +upstreamnt  +downstreamnt atgagtttgtcggagggtctctttctacttttcatgcttgtcttctgcgaaggagccaga gtcgcagaaagcggagacgacaatggggtctttgacctgttcgagatcacgcgggtgtcc cgcaaaaaccacggggtcgcgctggtcaaagggctggaccccaacagcccggcttacaag actctcaacccgaacctgatcccccccgttcccgagggcaccttcagggacctgctggag gacattcgggccgaaaggggattcattttcatggccaccttcaagcaggcgaagaagacg cggggcagcctgctgtcggtggagaagacggatggcacggggcaggttttcgagatcgtg tccaacggcaaggcggagactctggatatcgtttactccacggagaacaagcagcaggtg gtgtcgctggagaacgcccgattcgccacaggccagtgggtcaacatcaccctcttcatc caggaagactgggcgcagctgtacctgggctgcgataaggtggacacggcggagatggac gtctccattcagcagatcctctcgcaggacttgccgagcttcgccagactgcgagtggcc aaaggcgccatcaccaacttcctgggggtgctgcagaacgtgcgctttgtgtttgggacc acgctggaggcgattctgagaaacaaaggctgcgcgagatctctcactgacaccatcact ttggataatccagttaatgggtcaagtccagcgataaggaccgacttcattggccacaaa gccaaagacatccagaatgtgtgcggcttctcctgcgatgaactggccaccatgtttaag gagctccaaggactgcgggtcgttgtcaaccagctggcagacaacatccacaaactgact aaagagaatgagctgatccaaaagaaattcaactttgaatccggctcctgcatccacaac ggagtattccataaggagagggacgagtggaaagtggacaactgcactgagtgcacgtgc cagaattctgcgattgtgtgtcatgagatctcctgccctctgatgccctgcaccaatgcc acggtgcctgacggcgagtgctgcccacgatgtggtactttgagcgactccccagaagat ggctggtctccatggtcagaatggactcactgctctgtgacctgtggacgaggaattcaa cagcgtggccgctcgtgtgaccgcatcaacaacaactgcgaggggacttctgtccagacg cgtgactgctacattcaggaatgtgacaagagattcaagcaggatgggcagtggagccac tggtccccttggtcatcatgctcagtgtcctgcggctccggagtcataactcgcatacgc ctgtgcaactctcccacacctcagatgggtggcaaggaatgtgaaggagaaggcagacaa acagagaaatgccagaaggacccatgcccaattaatggtaaatggggcccctggtcactc tgggatacctgtactgtgacctgtgggggtggcattcagaggagaactcggctatgcaac gatccagcacccaagtacgggggcaaagaatgcatcggggagcctgccgaaacgcagctc tgcaacaagaaagactgtcctattgatggctgtctgtccaacccctgttttgctggcaca caatgcaccagctttcctgacggatcctggaagtgcggctcttgcccaacaggttaccat ggcaatggcatacactgcaccgatattgatgaatgtacagaagtgcctgatgcctgcttt gtgtccaacggcgtccacagatgtgaaaacacggagcctggctacaactgcttgccctgc cctccacgcttcacaggctcgcagccatttgggaggggagttgaggacgccacctctaaa aagcaggtctgcaaacctcgtaacccttgcaatgatggaacccatgactgcaacaagaac gcacgctgcatctacctgggtcattataccgaccccatgttccgatgtgagtgcaagcca ggctttgccggtaacggatacatttgtggagaagacactgacctggatgggtggccaaac gaggatctggagtgtgtggaaaatgcaacctatcactgtaaaaaggataactgtcccaac cttcccaattctggacaggaagactttgataaagatggcactggtgacgcctgtgacagt gatgatgataacgatagtgttccagatgacagggataactgccagtttatttacaaccca cggcaatatgactacgatcgggatgatgttggtgaccgctgtgacaactgtccatacaat cacaacccggatcaggtggacacagacaacaatggcgagggagatgcttgtgctgtggat attgacggggatggcattctgaatgagaaagacaactgcccatatgtttacaacgttgac caaagagacacagacttggatggagttggagaccagtgcgacaactgccccttggaacac aacccagatcagatcgactcagactctgatcttgttggtgacaaatgtgacagcaatcaa gacattgatgaggatggccaccaaaacaatctcgacaactgcccctacattccaaatgca aatcaagctgaccatgataaagatgggaagggtgatgcttgtgattatgatgatgacaac gatggcattccagacgacaaggacaactgcaggttggccttcaaccctgaccagttagac tctgatggggatggtcgtggcgatgcttgtaaagatgactttgaccaggataaagtgccc gacatctatgacgtgtgcccagaaaactttgacatcagtgagactgatttcagaaaattc cagatggttcctcttgatcccaaaggaacatcacagattgatcctaactgggtggtacga catcagggcaaggaattggtgcagactgtaaactgcgacccaggaatcgctgttggtttt gatgaattcaacgctgtggatttcagtggaacattcttcatcaacaccgatagagatgac gactatgcaggctttgtttttggttatcagtctagcgcccgtttttacgtggtcatgtgg aaacaaattacacagacgtactggtcagacacaccaaccaaagctcagggctactctggc ctgtcaatcaaagttgtcaactcaacaacagggcctggggaacacctgaggaacgctctg tggcacacaggagacactacaggacaggtacgtactttatggcatgatccccgcaacatt ggctggaaagacttcactgcctacagatggcaccttactcacagaccaaagacaggacac attagagttgtcatgtacgaaggcaaaaaaatcatggcagattccggatccatctacgat aagacctatgctggtggacggttagggctgtttgtgttctcccaagaaatggtttacttc tcagacctcaaatatgaatgtagagatacataa

DBGET integrated database retrieval system