Polypterus senegalus (gray bichir): 120523208 Help Entry 120523208         CDS       T08668                                  Symbol traf6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism psex  Polypterus senegalus (gray bichir) Pathway psex04010   MAPK signaling pathway psex04120   Ubiquitin mediated proteolysis psex04140   Autophagy - animal psex04144   Endocytosis psex04620   Toll-like receptor signaling pathway psex04621   NOD-like receptor signaling pathway psex04622   RIG-I-like receptor signaling pathway psex05132   Salmonella infection psex05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:psex00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     120523208 (traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     120523208 (traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     120523208 (traf6)    04140 Autophagy - animal     120523208 (traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     120523208 (traf6)    04621 NOD-like receptor signaling pathway     120523208 (traf6)    04622 RIG-I-like receptor signaling pathway     120523208 (traf6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     120523208 (traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     120523208 (traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:psex04131]     120523208 (traf6)    04121 Ubiquitin system [BR:psex04121]     120523208 (traf6) Enzymes [BR:psex01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      120523208 (traf6) Membrane trafficking [BR:psex04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     120523208 (traf6) Ubiquitin system [BR:psex04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     120523208 (traf6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 zf-TRAF_2 SlyX zf-RAG1 RING_XB3-XBAT31 TRAF3_RING ATG16 zf-RING_11 DUF7310 DUF4455 Spc29 DUF7607 U-box Laminin_II TMF_DNA_bd PspA_IM30 CEP104_ZnF Motif Other DBs NCBI-GeneID:  120523208 NCBI-ProteinID:  XP_039600215 LinkDB All DBs Position 1:16844797..16916136 Genome browser AA seq 566 aa AA seqDB search MSLVGYDSETDSISSGCCAGLSGSCAASEKADLKNYNGSATYQEIPHCTTEMQGYDVEFE PPLESKYECPICLMALREAVQTPCGHRFCKGCILQSIRDAGQKCPVDNEILLENQLFPDN FAKREILSLTVRCPNKGCEQRMELRKLETHTSQCLYATVPCRDCNKQVRRSYMNEHMANQ CLRRLIICPNCAGSIIFEEAKTHEEECPLANVMCEYCSTELIREQLKSHCDMDCPKAPVL CTFSSFGCPEKMQRDKLAQHMQEYTQMHMHFMAMSLRSLSLTTPSHMGPILQSDSSEFHF DPAPPLTGPCTMASPISASGATGGQTPSHCDCDQNRQHLQETIHQLESRLVRQDHQIREL TAKMETQSGLVGDLKRQVRVLEEKVNELEAQQFNGIYIWKIENFSAFLRTQEADQPVVIH SPGFYTGRPGYKLCLRLHLQTPSVPRCANYISLFVHTMQGIYDSQLPWPFQGTIRLSILD QTEGPVQQNHEEVMETKPDLLAFQRPSMPRNPKGFGYVTFMHLQALRQREYIRDDTLLVR CDVTPRIDLSCIRREGFQPRGLESSM NT seq 1701 nt NT seq  +upstreamnt  +downstreamnt atgagcctcgtcgggtatgacagtgagacagacagtattagcagtggctgctgtgctgga ttgtctgggagctgtgctgcatcagaaaaagcagacctgaagaattataatggtagtgcc acataccaagaaattccgcattgcacaactgagatgcaaggctatgatgtggaatttgag cctccgctggaaagcaagtatgaatgtcccatctgtttaatggctctgagagaagcagtg caaacgccttgtggccaccgcttctgtaaaggctgtatcctgcagtctatcagggatgca ggacaaaagtgtccagtggacaatgagatactcttggaaaatcagctctttccagataat tttgcaaaacgagaaattttatcactaacagttcgttgtcccaataaaggctgtgagcaa aggatggagctacgcaaactggagacacatacatcccagtgcttgtatgctacagtgcca tgcagagactgcaataaacaagtgaggaggagctatatgaatgaacatatggctaatcag tgtttacggcggcttatcatctgcccaaattgtgcaggttccatcatttttgaggaggca aagactcatgaagaagaatgtcctttagcaaatgtgatgtgtgaatactgcagtactgag ctaattcgagagcagctaaaaagccactgtgatatggattgtcccaaagcccctgtgcta tgtacttttagttcctttggatgtccagaaaagatgcagcgtgacaagctggcacaacac atgcaggagtacacacagatgcatatgcacttcatggcaatgtctttacgtagtctcagc ttgaccacacccagccacatggggccaatcctacaaagtgatagttctgagtttcatttt gatccagcaccccctctaacagggccctgcaccatggcatcccccatatctgcgagtgga gcaactggtggtcaaaccccatcccactgtgactgtgaccaaaaccggcaacatcttcag gagactatacatcagctagaaagtcgacttgttaggcaagatcaccaaatccgggaactg acagcaaagatggaaacgcagagtggcctggttggcgatttgaagagacaagtccgtgtt ttggaagaaaaggtgaatgagcttgaggctcagcagttcaatggcatatacatctggaag attgagaacttctctgcatttctccgaacccaagaagctgaccagcctgttgtgattcat agtccaggcttctacacaggccggccaggctacaagctttgtctgcgccttcacttgcaa acgcctagtgtgccacgatgtgccaattacatttctctctttgtgcacaccatgcagggc atatatgatagtcagttaccttggccgttccaaggtacaattcgcctttctattctagac cagacggagggtcctgtccaacaaaaccatgaagaggtgatggaaacaaaaccagatctt ttagctttccagcgccccagtatgccacgcaatcctaaaggttttggctatgttacattc atgcacttacaagctctgagacagagagaatacatacgagatgatactttgctggttcgt tgtgatgtcacacctcgtatagatttaagttgcattcgcagagaaggctttcagcctaga ggtttagagtcctcaatgtaa

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