Polypterus senegalus (gray bichir): 120530378
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Entry
120530378 CDS
T08668
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psex03036
]
120530378 (smchd1)
03400 DNA repair and recombination proteins [BR:
psex03400
]
120530378 (smchd1)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120530378 (smchd1)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120530378 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_8th
Ig_SMCHD1_4th
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_2nd
HATPase_c_3
SMC_hinge
HATPase_c
Ribophorin_II_2nd
Motif
Other DBs
NCBI-GeneID:
120530378
NCBI-ProteinID:
XP_039610777
LinkDB
All DBs
Position
5:complement(76481608..76941149)
Genome browser
AA seq
2005 aa
AA seq
DB search
MSGDDKFRSSDTSVQPTAEASLLRRRVFVVDCRRECAEATEEVLESGDVTFEQFRDALCR
VFGICSEDNFVISTTSRKTLDHESFARIQDGDTLYVLQSIGQNLPKPTKERIEFLPHYDT
LVKSGMYEYYASEGQKSLPFAFAELIDNALSATSQNKDSREIEIRLLFDDSQGKPAVVVI
DNGRGMSPRQLNNWAIYRLSKFTRVEDSFESDHSGYVRPSHVPRSLNSDISYFGVGGKQA
AFYIGQSTRMVTKPSSSVDVHELLLSKEEFEKKEKNKEAIYSGFIRNRMPGDSSHIICED
ERFLHSIILEEKNKESFTAVVITGLLPDHIQYLRNNFDQLARELTHVYHYYIHGPKGNDM
SSSSKHEHILSNIDIQISMFEKGKVPRMVNLREIKDDMQSLYINSASDSFEFRTEVDGDG
VVEGVIRYHPFLFDRETYPDDPNGILKTDEDDEDCILVEQKARGKKPVFECFWNGRLIPY
TTVDNFDWCAPPKKGNLVPVECYYRISGVLFTNDKFQVSTNKLTFMDLELRLKEKNTLFT
RLIKGQAQRMVIFKEFTQWLKECHEKYDKQIKFCGFKGTISRPEIQSKRMQSPWSKFMSI
EWDGKVYKAGQKVKSMKTSPLVFGSISHFLLHGDYDGDVYATGGEVKIIVEPQALYNEVK
YIPISKIDRSASPNSIKKGIEDEMARLPDKLAVTWPDGDELKSNDILSAGTPIGAMRIEI
LNKKGEAMQKLPASSHTGSKKLLVELKVIFHCDREDEVIISHISQHGGKWPYWFKKMESV
TRLGKYTLKLQTVLNESNADTYAGISLPSKIIKFVVNEGKAAKFIVANLDPPFRVGVPFN
IPLELIDKYGNPTRPSVDIKPVLECSGLTISHEGIMINGASLIIKGVLAKGSVNNCQGKN
FTIKVSLPELEQESQLLKIKLLPGPPYTLRVKPDSEALSFENGTAFPFQVEVLDEVENIT
VQPRLLVHCKFAGVPNLPVYTVDCSTTGFGILTGPVVHIKKLKKDQVLNARFEIPSCVNV
AAVEKTINILPSKRVAKLEVFSLSGDKPIQIMHDDEICWTAGDSIKNVIFKMFDEGDREI
AITPSLAEKIKVNWTPKIKKDLLLQGSLPDIKVSTSVKDVRYCQVSFQDDHVSLESAFTV
KPLPDEPKYLKSSLKGVSTIKMGEELKGEIYLEVTDQFGNTIQSLTASSINSLGISSEGL
DKSTLKVSWQDKTKMMLVQGIKFLPAAPGSKELCFAWREFAEYVRINLVAGPPAQLKIVQ
PTDIEEPLTVVNGKELEKPFVVQLCDQWGNPSPEAQVKILLVKDNNLKTVPAVNFQKTDN
DGMATFEVFQVFAARGEYSIHFKVSHNKINFVGPFVKMNVIPDSNKPVKVSVDYDRNASF
PAGGFLTVFKVSVLSEDEKVMRNLNPAVMTMCLWKGVTNGSRPPGNATVLNCSKPKENEK
DGYFYFRDKIIPDQVGVYSIQFMYMLDKSKMLCSEPISINVIPNEPVKLMPVVQPPTPVV
SNISSVASRTLVKHLSLKIMDEYNNPTCEKMNGKIIVTIRSSEENETEIPVFQGDVASVE
FNFSNGISKISSLLVAENSPGKDSSQYVLVFYPVIPELGESQLEPFELHFMFSNDVKKQA
QMATLTREKDQLRQSIGAYRSLFDTTKQLLTEIKCQAKEAANKESNLKSQLFKHNIDVSL
LNSVQQTEALIKDMLAEKQKIMKQPRRVCAIPNTPKGNSNVLGKIAHLALIEDNEAAKVI
SWHLASDMDCVVTLTTEAARQIYNETQGRQQVLPLDSIFRKNLPDWARPLPHLRNGKCHF
QPTGNPVFARDLLIFPEHVEDCKIVFGMLLGDSIILDNLDSANLYRKEVVKITHCPTLLT
RQGDRIRSNGKFGGLQNKAPTMEKLRGMVFGAPLPSFCATLEAKIDLLQQYRTAVIKCST
VNEELNLQVEALNSPEMKQKREELSLQEKQLKEIEKKLGMTPKRGHGENRTCHDGSQSSV
QEGLLPPPSKKMRDAEITRMRKIKY
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atgtctggggatgacaagtttcggagcagtgacactagtgtccagcctaccgccgaggcc
tctttgcttcgacgtagagtcttcgttgttgactgccgccgggaatgtgccgaagccact
gaggaggtgctggagagtggagatgttacttttgagcagttcagggatgctctgtgtcgg
gttttcggaatatgttctgaagataattttgttatttcaacaacttcaagaaaaaccctt
gatcatgaatcgtttgcgaggattcaagatggtgataccttgtatgtgcttcaatctatt
ggtcagaatttgccaaagccaacaaaagaacgtattgaattccttcctcattatgacacg
cttgttaaaagtgggatgtatgaatattatgcaagtgaaggacaaaagtctttacctttt
gcctttgctgagctaattgacaatgctctgtcagccacatcgcagaataaggacagcaga
gagatagaaatccgattgctttttgatgattctcaagggaagcctgcagtagtggtcata
gataatggaagaggcatgtcccccaggcagctaaataattgggccatatacagattatcg
aagtttacacgagtggaagattcgtttgaaagtgatcattcaggctatgtgagaccttcc
catgtaccaagaagtttgaacagcgacatatcttattttggagtgggaggaaagcaggcc
gccttctacattgggcagtcaactagaatggtaactaaaccgtcaagctcagttgatgtt
catgagctactactttcaaaggaggaatttgaaaaaaaagagaaaaacaaagaggctata
tatagtggattcatcagaaatagaatgcctggtgattcctcacacataatatgtgaagat
gagagatttctgcacagtattattttggaggaaaaaaataaagaaagcttcactgctgtt
gttattactggactattgcctgatcatatacagtatttgaggaacaattttgatcagttg
gcacgggaactcacgcatgtttatcattattatatccatggaccaaaaggcaatgatatg
agttcttcaagtaaacatgagcacattttgagcaatattgatattcagatctcaatgttt
gaaaagggaaaggttcccaggatggttaacctaagagagattaaggatgacatgcaaagt
ttgtatatcaactcagcttctgatagttttgaattcaggacagaggtggatggagatgga
gtggtagaaggggtaatcagatatcatcctttcctctttgatcgagaaacctatccagat
gaccccaatggaattttaaaaacagatgaagatgatgaagactgtattttggttgagcag
aaagccagggggaaaaaaccagtgtttgaatgtttttggaatggaaggttaataccgtat
acaactgtggataactttgactggtgtgctcctccaaagaagggaaatttagtacctgta
gagtgctattatcgtatttctggtgtgctttttaccaatgacaaatttcaagtcagcact
aacaaactcactttcatggacctagagctaagactcaaggaaaagaatacactcttcaca
cgcttgatcaaaggacaggcgcaaagaatggtaatttttaaagagtttactcaatggttg
aaagagtgccatgagaaatatgataagcaaattaaattttgtggttttaaaggaacaata
agtagacctgaaattcagtccaaaaggatgcagagtccatggtcaaaatttatgtcaatt
gaatgggatggaaaagtttacaaagcagggcaaaaggtaaaaagcatgaaaacatcccca
cttgtttttggaagcatttctcattttcttcttcatggtgactatgatggtgatgtatat
gctacaggtggagaagttaagattattgtggaaccacaggctttgtataatgaggtaaaa
tacattccaatatcaaaaattgaccggagtgcatcacctaacagtatcaaaaagggcatt
gaagatgaaatggcaagacttccagataagcttgctgttacatggcccgatggagatgag
ctaaagtccaatgatatcctctctgctggaacacctataggtgcaatgagaattgagatt
ttgaacaagaaaggtgaagcaatgcaaaaactgccagcttcaagtcatacaggatcaaaa
aagttattggttgaattaaaagtaattttccattgtgacagagaggatgaagtaatcatt
tcacacattagccaacatggtggaaagtggccttactggtttaaaaaaatggaaagtgtt
actaggctaggaaaatatacgttgaagctccagacagtgctgaatgagagcaatgcagac
acatatgcaggaatttctctaccttccaagattattaaatttgtagtaaatgagggtaaa
gcagctaaatttattgtggcgaatttggaccctccttttcgtgttggagtaccatttaat
attccattggaacttattgataaatatggtaaccctactcgaccaagtgtggatatcaaa
ccagtcttggaatgcagtggattgaccatctctcatgaaggaataatgataaatggagca
agtttaatcattaaaggagtcctagccaagggctctgtaaataactgccaaggaaagaat
ttcacaataaaagttagtctgcctgagttggaacaggagtctcaattgcttaaaatcaaa
ctcctccctgggcctccatatacactaagagtaaagccagattctgaagcgctgtccttt
gaaaatggaactgcttttccctttcaagttgaggtacttgatgaagtggaaaatatcaca
gttcaacctcgactgttagttcactgtaagtttgcaggtgtaccaaacttgcctgtctac
acagtggactgcagtactaccggttttggcatattaactggtccagtggtccatatcaag
aagctgaagaaggatcaagttttaaatgcaagatttgaaatcccaagttgtgtgaatgtt
gctgcagtagagaagactattaatattcttccaagtaaacgtgttgctaaattggaagtc
tttagtcttagtggagacaaacccattcagattatgcacgatgatgaaatttgttggaca
gcaggagactccatcaaaaatgttatcttcaagatgtttgatgaaggagaccgagaaatt
gcaattacaccttccctggccgaaaagattaaggttaactggacccccaaaattaaaaag
gatctcctacttcaaggatcacttccagacataaaagtttccacatcggtgaaggatgtt
cgttactgccaggtttcatttcaagatgatcatgtttctttggaaagtgcttttactgtg
aagccacttccagatgagcctaaatatttgaagtcttctttaaaaggtgtcagcactatt
aaaatgggtgaagagttgaagggtgaaatttatttagaagttactgatcagtttggtaat
acaattcaatcactgacagcctcttcgataaactctttgggaatctcttcggaaggactt
gataaatcaactttgaaggtttcatggcaggacaaaacaaaaatgatgttggttcaaggg
ataaagttcttgccagcagctcctggttccaaagaattatgtttcgcttggcgagagttt
gcagagtatgttcgaattaacctggttgcaggacctccagctcaactaaagattgttcaa
cctacagatatagaagagcctttaactgttgttaatggaaaagaactagaaaagccattt
gtagtccagctctgcgatcaatggggaaatccatcacctgaagcacaggtgaaaatctta
ctcgtgaaggacaacaacttaaagacagtaccggctgttaattttcagaaaactgacaat
gatggaatggctacttttgaagtatttcaggtgtttgctgctcggggtgaatatagtata
catttcaaagttagccataacaaaattaattttgttgggccatttgtaaaaatgaatgtc
attcctgattccaataaacctgtaaaagtttctgtggattatgacagaaatgcatctttt
cctgctggaggatttttgacagtgttcaaggtcagtgttctttcagaagatgaaaaagta
atgagaaatttaaatccagctgtcatgacaatgtgtttatggaaaggtgtgactaatggt
tcccgaccacctggcaatgcaacagtgcttaattgcagtaagccaaaggaaaatgagaaa
gatggctatttctatttcagagacaagataattccagatcaagtcggtgtgtatagcatc
cagttcatgtatatgcttgataaatcaaaaatgctctgcagtgaaccgatttcaataaat
gtaatacctaatgagccagtgaaacttatgccagttgttcagcctcccactccagttgtt
tcaaatatttcttctgttgccagtcggactctggtgaaacatctttctctaaaaataatg
gatgagtataataatccaacttgtgaaaaaatgaatgggaaaatcattgtcaccattaga
agctccgaagagaatgaaactgaaattcctgtatttcaaggagatgtggcatctgttgaa
tttaattttagtaatggcatttctaaaatttcaagtcttttggttgctgaaaatagccct
ggaaaagacagtagtcagtatgtacttgtgttttatccagtcattccagagctgggagaa
agtcagttggagccatttgaacttcatttcatgttttctaatgatgttaaaaagcaggcg
caaatggcaaccctgacaagagagaaggaccagcttaggcagtccatcggtgcctacagg
agtttgtttgacacaacaaaacaactacttactgagataaagtgtcaagcaaaagaagca
gcaaataaggaatctaatttgaaatcacagctatttaaacataacatagatgtatcactg
ttaaattcagtacaacagactgaggcactgataaaggatatgttagctgaaaaacaaaaa
ataatgaagcaaccaagaagagtatgtgctattcctaacactcctaaaggcaactccaat
gttttagggaagattgctcatttggcactaattgaagacaatgaagcagcaaaagtaatt
tcttggcatttggccagcgatatggactgtgtagttactcttactacagaagcagctcgt
caaatctacaatgaaactcaaggtagacagcaggtgcttccccttgattccatctttagg
aagaaccttcctgactgggcaagaccattacctcacctgcggaatggaaagtgtcatttt
cagccaacaggaaatccagtatttgcaagggatttgcttatctttccagaacatgttgaa
gactgcaaaatagtgtttggcatgctgctaggagattccattattctagacaacttggat
tctgctaatctttatagaaaagaggttgttaaaattacacattgccctacactgctgaca
aggcaaggagatagaatccgtagcaatggaaaatttggaggccttcaaaataaagctcca
acaatggagaagctgagaggaatggtctttggcgctcctctgccaagtttttgtgctaca
ctggaagcaaaaattgatcttcttcagcagtaccgcactgcagtaatcaaatgctctaca
gttaatgaagaattaaatttacaggtggaagctctgaattctccagaaatgaaacaaaaa
agagaagaactttcattacaagagaaacagctgaaagagatcgaaaagaaactaggtatg
acaccaaaacgagggcatggtgaaaacagaacatgtcatgatggctcgcagagtagtgtt
caagaaggtctgcttccacctccttcaaaaaagatgagagatgctgagataacaagaatg
aggaaaattaagtattaa
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integrated database retrieval system
