Polypterus senegalus (gray bichir): 120530882
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Entry
120530882 CDS
T08668
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120530882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120530882
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
120530882
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
120530882
NCBI-ProteinID:
XP_039611550
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Position
6:25558757..25564249
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AA seq
415 aa
AA seq
DB search
MAECYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG
ILHAPETGWGNLVYVVNYPKDNKRKMEEIDAASAVKVKRAVQKTSDLIVLGLPWKTSEQD
LKEYFSTFGEVLMVQVKRDIKTGNSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPN
SKQSPDEPLRSRKVFVGRCTEDMTAEELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQV
AQALCGEDLIIKGVSVHISNAEPKHNNSRQMMERGGRFGNNPGFGNQAAGFGNSRGGGSG
LGNSPNNNVGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNAPAGQG
NMQRDQGQGFGSGNNNYGSNSAGLGWGAGSNSGTGSGFNSGFGSSMESKSSGWGM
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggccgagtgttatatccgagtggcggaagacgagaacgaggagcccatggagattcct
tcggaggatgatggcacagtgctactgtccactgtcacggcgcagttccccggagcgtgc
ggcctgcgttaccggaacccggtgtctcagtgtatgaggggggttcgcctggtggaaggc
attcttcatgcgccggagactggctggggaaacttagtctacgtggtcaattatcctaaa
gataacaaaaggaaaatggaagaaattgatgcagcatcagctgtgaaagtaaaacgtgca
gtgcagaaaacgtctgatttaattgttcttggtctaccatggaagacatctgaacaagat
ttaaaggaatacttcagcacctttggcgaagtgctgatggttcaggttaaacgcgatata
aaaacagggaactccaagggctttggctttgtcagatttacagactacgaaacacaagtg
aaagttatgtcacagcgacacatgatagatggaaggtggtgtgattgcaagttgcccaat
tcaaagcaaagtcctgatgagcctctaagaagcagaaaagtgtttgttggtcgttgtaca
gaggatatgactgctgaggagctgcgacagttctttatgcagtatggggaagttactgat
gtcttcatacccaagcccttccgagcttttgcgtttgtcacctttgcagatgaccaggtt
gcccaggctctttgtggagaggacctaataattaaaggagtcagcgtccacatctcgaac
gccgagcctaaacacaataatagtaggcaaatgatggagcgaggggggagatttggtaac
aatccagggtttgggaatcaggccgcggggtttggaaatagtaggggtggaggtagcggg
ctaggcaatagccccaataacaacgttgggggtggaatgaattttggtgctttcagcatt
aatcctgcaatgatggctgcagcacaagccgctttgcagagtagctggggtatgatgggc
atgctagcaagtcagcagaatcagtctgggccctctggcaatgctccagcaggccagggc
aatatgcagagagatcagggtcagggttttggctctggcaacaataattatggttcaaat
tctgcaggattgggttggggagcaggttcgaactctggcacaggcagtgggtttaattca
gggtttggttccagtatggaatcaaaatcttctgggtggggaatgtag
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