Polypterus senegalus (gray bichir): 120531621
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Entry
120531621 CDS
T08668
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120531621 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120531621 (smg6)
03032 DNA replication proteins [BR:
psex03032
]
120531621 (smg6)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120531621 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
120531621 (smg6)
DNA replication proteins [BR:
psex03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
120531621 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
120531621
NCBI-ProteinID:
XP_039613142
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All DBs
Position
6:complement(130508527..131038417)
Genome browser
AA seq
1472 aa
AA seq
DB search
MAEQLERVRISAAELRSSPSVGNEERTDTAKSCAERRLRQDRKRPDLQLYQPGLSRLRQR
RETSGSSEGDAIHMEDLNKEQESVGNTPVIENSSTSVLEIDLAYQKQTRRNRKPDRQIYQ
PSGRRLQQTNSTSKLVTASEDVKVNEHAVIEKEIKTENMILQEPSPIKVPDSKNNVKGSK
KCESVRTLVKEAQTLSISEDNQLILRKGKHGKHLVESCEEKRQNKNENRRHTIIPKDEMK
DVGRKKSEKDDKGSEIQKESGWMFESDEVTHPNKNEDYQHFPVKTNASSKRYSRSDKRRN
HNRTCSTSSDSSGTSFDGLANGSGSTATGEKRKKQHTQSYSDVFPSRDQEKSRGYREKAS
VSSTDSLEEFVGREQKDYSLERHSNNRMRRKNNDDKESGVMKTALERGSGLHSVNSSCLL
KKSLSSKGKGGGILVLPVRTDLTVSVNPGSRLIGTRGSRERGRGGATRRLWDPNNPDEKP
ALSQVGHCYSLQQQQAVHSQQQQLHFLDTDDETTGSPPSQHGDAFQNFSTTQQTLSAVTS
GNYKFQNSDNPYYYQPGVPRYPYHYLPYGVPGANGLYPSTPPSYYPGYLHLSLQQGYLST
PVSPEEAEVQARGLQQQELSKLLRIADNQEVQLSNLLSRDCLSTEGLERMSQIRAELLAL
YEKVILSDIEYSDAQNLDQILWKNIFYQVIEKFRQLLKDPASDTNQHIREMLLHVLDEGA
MFFDSLLKKLQATFQFKLDDYMDGMAIRSRPLRKTVKFALISAQRCMICLGDIARYREQT
SDTANYGKARSWYLKAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAASNPILTA
KESLMSLFEETKRKADQLERRRQQQVLQDREEVSGFKLGLWSRGSGGSGVRSSLGHFGDE
TARVEIWVRPKGRRKSQSTKGVECTRELEQDKDFGYLTPSELNKRFILNFLHAHGKLFTK
IGMETFPAVASRVLQEFYALLRQSPCPIGSTRMLQLTTINMFAVHNSQNRDDSCENRSLI
HEQSIALGLAMFALLVERCTELLREARKASTTTGNENNSEEDDGDIKVSSFIPDLRELLP
SVKVWSDWMLGDPGQWNPPPCSLVLPHGWTLNVWQTLAEFCNILTGVNQCEVPLYKDSDD
DLCLLILDEDRLLSGFIPLLGAPQDPCYVEKTSDKIIAADCKRVTVLKYFLEALCGQEEP
LLAFKGGKYVSMAAVPDTMGKETGSREEKQTDNQEDDVLIEALEESSEPDASGSEDDLRE
LRARKNALTRKVAEQRRRHDKIQEVLQTCRQLEIEITPVFLVPDTNGFIDHLSGLATLLS
CGHYILVVPLVVITELDGLVRGQETEYRTGSHARQVQERARKAVHFLESKFEAREPCLRA
LTSRGNELESIAFRSEDTSGQQGNNDDLILSCCLHYCKDKAKDFMPTQKDEPIRLHREVV
LLTDDRNLRVKALTRNVPVRDIPAFLKWAKVG
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcaactggagcgagtcaggatctcagcggcagagcttcgtagttcgccgtct
gtaggtaacgaagagcggacagacactgcaaagagttgtgcagaaaggcgtcttcggcaa
gaccggaagcgtccagacttacaactgtatcagccagggttgtcccgtctgaggcagcgg
cgagaaacatctggaagtagtgaaggtgatgctattcatatggaggacttgaataaagag
caagagtctgttggtaatacacctgtgatagaaaattccagtacttctgttttagaaatt
gacttggcatatcaaaagcaaactcgtagaaaccgcaaaccggatcgtcaaatataccag
ccaagtgggcgtagactccagcaaacaaattctactagtaagttagtgactgcaagtgaa
gatgtaaaagttaatgagcatgctgtaattgagaaagagattaaaactgaaaacatgata
ctccaagaaccatcacccattaaggttccagattccaaaaacaatgtgaagggatctaag
aaatgtgagtcagtcaggactttagtgaaagaagcacagactttgagcatttctgaggat
aatcaattgattttgagaaagggaaaacatggaaagcatttagttgagagctgcgaggaa
aaaagacaaaataagaatgagaacaggaggcatactataattccaaaagatgagatgaag
gatgttggccgaaagaaaagtgaaaaggatgataaaggatcagaaatacagaaagaaagt
gggtggatgtttgaatctgatgaagtaacacatcctaacaaaaatgaagactatcaacac
tttccagtaaagaccaatgcctcatccaagcgctattctaggtcagataagcgtcgcaac
cacaatcgaacatgcagtactagctcagatagtagtggtaccagctttgatggattagct
aatggctctggcagtactgctacaggtgaaaagaggaaaaagcagcacacacaaagttat
tcagacgtttttcccagtagagaccaagaaaagtccagaggttacagagagaaggctagt
gtttcctccactgattcacttgaagaatttgtagggagagagcaaaaagactacagccta
gaaagacactctaacaacagaatgagaagaaaaaataatgatgataaagagagtggtgtc
atgaaaacagctttagagcggggaagtggcttgcattcagtaaactccagttgtctgctg
aaaaaaagtctcagttctaaaggaaaagggggaggaatactggtgcttcctgttcgcacg
gacctcactgtatctgtcaatccaggttcacgtctcattggaactagggggtctagggaa
cgaggaagaggtggagctactagaagattgtgggatccaaataatcctgacgagaagcca
gccttatcgcaggtgggccattgctatagtttacagcaacagcaggctgtacattcacaa
caacagcaactgcactttcttgatacagatgatgaaacaactggaagccctcctagtcaa
cacggcgatgcgtttcaaaatttctccaccactcaacaaactctgagtgctgttacttct
ggcaactacaaatttcaaaactctgataacccttattattatcagccaggtgttccccgt
tacccataccattatttaccttatggagtacctggagctaatggcttgtacccctccact
cctccaagctattatcctgggtaccttcatctttcactccagcaaggctatctctcaacc
cctgtctcccctgaggaggcagaggttcaggctcgtggtctacaacagcaagaactcagt
aaattgttgagaatagctgataaccaagaagtgcagcttagtaatctactatcccgtgac
tgcctcagtacagaaggactggaaagaatgtcgcagatcagggcagagcttttggctctg
tatgaaaaagttatcctcagtgatattgagtattctgatgctcaaaatctggaccagatc
ctgtggaaaaatattttttaccaggtaattgaaaaattccggcagcttcttaaggatcca
gcttctgataccaaccaacatattcgagaaatgttgctgcatgtgcttgatgagggtgct
atgttctttgactctcttctgaagaagctccaagccacatttcagttcaagctcgatgac
tacatggatgggatggccatccgcagccgtccactgcggaagacggtgaaatttgcactt
atcagtgctcagagatgtatgatttgcctgggggacattgcaaggtaccgggagcagaca
agtgacactgcaaactatggaaaagcacgcagttggtacctcaaggcacagcagattgct
ccaaaaaatggacgtccatataatcagcttgcattgttagcagtttacacgaagcgaaaa
cttgatgctgtatattactatatgcggagcctagcagctagtaacccaatcttaacagcc
aaggaaagcttgatgagcctctttgaagagaccaagcgcaaggctgaccagctggagcgt
cggcgacagcaacaagtgcttcaggatagagaagaagtttctggtttcaaacttggactc
tggagtcggggttcaggaggctcaggagtgagatcatctcttggacactttggagatgaa
acagcccgtgtggagatctgggtgcggcctaagggcaggaggaaaagtcagtccacaaaa
ggagtggaatgcactagggagctggaacaagacaaagattttgggtacttgacaccaagt
gagctcaataaacgattcatcttgaactttctccatgctcatggcaagctcttcacaaag
attggaatggagacatttccagcagtagcatcccgagtcttacaagagttctatgcctta
ctgagacaaagcccttgcccaattggtagcacacgcatgctgcagttgaccacaatcaat
atgtttgctgtacacaactctcaaaatcgagatgacagctgtgaaaatcgatctctgatt
cacgagcagtctatcgccttggggctagccatgtttgctttgctggttgaacgctgcact
gaactactaagagaggcacggaaagcttccactacaactggcaatgagaataacagtgag
gaagatgatggtgacattaaagtgtcgagttttatcccagacctgagagagttgttgccg
agtgtcaaggtctggtctgactggatgttgggtgacccaggccagtggaatccaccacct
tgcagtcttgttttaccacatgggtggacactgaatgtgtggcagaccttggcagagttc
tgcaacattcttacaggagtgaaccagtgtgaagtgccgctgtacaaggactcagatgat
gatttgtgtttactaattcttgatgaagatcgtctgctgtctgggtttataccactgctt
ggtgcaccccaagatccttgttatgtggagaagacatctgataagatcatcgctgcagac
tgcaagagggtcacggtcctcaagtatttcctggaagcgctgtgtggacaagaggagcct
ctgctggcattcaagggtggaaaatatgtgtcgatggcagccgtcccagacaccatggga
aaggaaacaggaagtcgagaggaaaaacaaacggacaatcaggaggatgatgtgcttatt
gaagctttggaggaatcatctgaaccagatgccagtggcagtgaggatgatttacgtgag
ttaagagcgcgtaagaatgcacttaccaggaaagttgcagaacagaggagaagacatgat
aaaattcaggaggtgttgcaaacctgtaggcagctagagattgagattactcctgtcttc
ctggttccagacacgaatggttttattgatcacctctctggcctagctacccttctgagt
tgtggacattatatcttggttgtgccacttgtagtgatcactgagctcgatgggttggtg
agaggccaggaaacggagtaccgcacaggaagtcatgcccgccaggtacaggaacgagca
cgcaaagcggtccacttcctagagagcaagtttgaagccagggaaccctgtctgagagca
ctgaccagtagaggaaatgaactggagtcaattgccttccgcagtgaggatacctcagga
caacagggaaataatgatgatcttattttgtcctgttgtctccactattgcaaagacaaa
gccaaggactttatgcccactcagaaagatgagccaattcgactacacagagaggttgtc
ttactgacagatgaccgaaacctcagagtaaaggcactaacccgtaatgtgccagtccgg
gacatccctgcttttctcaaatgggccaaagtaggctga
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integrated database retrieval system
