Polypterus senegalus (gray bichir): 120538027
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Entry
120538027 CDS
T08668
Symbol
setdb1a
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1-A isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex00310
Lysine degradation
psex01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
120538027 (setdb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psex03036
]
120538027 (setdb1a)
Enzymes [BR:
psex01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
120538027 (setdb1a)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
120538027 (setdb1a)
Heterochromatin formation proteins
Other heterochromatin formation proteins
120538027 (setdb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5604
Tudor_4
Tudor_5
SET
MBD
Pre-SET
Chromo_MORC2_6th
DUF4537
NLPC_P60
Motif
Other DBs
NCBI-GeneID:
120538027
NCBI-ProteinID:
XP_039623349
LinkDB
All DBs
Position
1:202491104..202662228
Genome browser
AA seq
1375 aa
AA seq
DB search
MESPVEGTMLEQEVVEELGISMEELRKWIDEEVEKCEYFKEKKAQLTELENWVVQKEAEA
ATVEKLFGDASQSVIDCESLIKDLYKKMGLNYRESSSEDESPAVKMKPSEIIEIDDDDDD
DDDDVVAVECVTPATKPPPTTTTKIATKDSSLFKDTVAALKKSAQDVQKLVDATTKKTPE
PPSTSLLRGTTTNRGGSTTVTPSTPTTVVVSRGPPMQQPDKNSNPEGELVLGMRILGKKR
TKTWHKGTLIAINPVNTGSFKYKVKFDNKGKSLLSGNHVAFDYHPTLDKLHVGARVVAKY
KDGNQVWLYAGVVAEMPNSKNRMRFLIFFDDGYASYVSLPELYPICRPLKKTWEDIEDAS
CRDFIEEYITAYPNRPMVLLKAGQLIKTEWEGTWWKSRVEEVDGSLVKILFLDAGALFQD
DKRCEWIYRGSTRLEPMFNLKMNTANFQEKKQAGLQRTRPNMGAVRTKGPVVQYTQEPSS
TTTSTLAKPTSTSTQAQGSAAASVSTTTTSQVQKILPKTDSPQPQQTRTDSPDSQVSSQS
RNKQQVAKKSTSSIPQRTSPSSSTTVPVENQTVTRTLIPTSHPRYFLLQTTGPIQQAIPL
QQPLQQPAQHLQNPQSTVVQQQSQITVQSTSQVYHSMSDRIPLEPSYQAPTEKLFYVPHQ
CSPACLDRLRPRKLDQYRSRNPLLIPLLYDFRRMTGRRRVNRKMSFHVIYKAPCGLSLRS
MHEIERYIFEARCDFVYLEMFCLDPYVLVDRRFQPQKPFYFIRDITYGKEDVPLSCVNEI
DMTPPPSVAYSKERIPGKGVYINTNADFLVGCDCTDGCRDRSKCACHQLTLLATACTPGG
QINAHAGYQNKRLEECLPTGVYECNKRCKCNHQMCTNRLVQHGLQVRLQLFKTQNKGWGI
RCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDYIESVENFKEGYESDAKCS
SDGSGVDIKGGSNAGDGGADDGDGQGEENSSSEENEEEDSNEDDDDDSSDDNFCKDEYLS
ASSVWRSYATRRQTRGMKEGGGASQDNKESLSRQTSQDDSKPPISEETGKNKVASWLSSN
SIDCSSVDSDSRSSFKMGDAKKELGAEKTSSLSSSKIKQEGPEIDVKQFKKELKIDKDSD
EQKSTSVYESPRASTKGEGIRRPLTKPNFFQNRRNSGAQQSADDVMTLSSSDSEGGRKRR
SSAAQNTGNDSDDIQTISSGSEEEDKKENNGVADSTGPVKRQVAVKSTRGFALKSTHGIA
IKTSNMVSSDKGDGATAWKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVF
VDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGSTECRGRLL
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atggaatcccctgtagagggaaccatgctggagcaggaagtggtagaagagctgggaatc
tctatggaagagctgcgcaaatggattgacgaagaagtggaaaaatgcgagtacttcaaa
gaaaaaaaagcacagttaacggagctagaaaactgggttgtacagaaggaggcagaagca
gccactgttgagaaactttttggagatgcctcacagtctgttatagactgtgaatcttta
atcaaggacctctataagaagatgggattaaattatagggagagcagctcggaagatgag
agtccagcagtaaaaatgaagccttcagaaataattgagattgatgatgacgatgatgac
gacgatgatgatgttgttgcagtcgagtgtgtcacacctgctactaaaccacctccgaca
accacaacaaaaattgctacaaaggattcatcactgtttaaagatactgtggctgcttta
aaaaaatctgcccaggatgtgcaaaaacttgttgatgctactaccaaaaaaaccccagaa
cctccttctacctccctgctgaggggaacaacaacaaacagaggtggctcaacaactgtg
actccctcaactccaacaacagttgtagtgtctcgtggacctccaatgcaacagccagat
aagaactctaacccagaaggagagttggtactcggcatgagaattttgggcaagaagaga
acaaagacatggcataaaggaacactaattgcaatcaatcctgtcaatactggaagcttc
aaatataaagtgaaatttgacaacaagggaaaaagtttgctttctggaaatcacgtggct
tttgattaccaccctacgttggacaagctgcatgtgggtgcccgtgttgtggccaagtat
aaagatgggaaccaagtatggctgtatgctggtgttgttgctgaaatgcccaacagcaag
aacagaatgaggtttcttattttttttgatgatggatatgcttcatatgttagtcttccg
gaactataccctatctgcagaccattgaagaagacttgggaagacattgaagacgcctcc
tgtcgtgactttatcgaagaatacattactgcttatccaaaccgtccaatggtactcctg
aaagctggccagttaatcaagacagagtgggaaggtacctggtggaaatcccgtgtggaa
gaagttgatggcagcctagtgaaaattctcttcctggatgctggtgctctgttccaggat
gataagaggtgtgaatggatctatcgtggttctacacgtctagagcccatgttcaacctg
aagatgaacacagctaactttcaggagaagaaacaagcaggattgcaacgtacaagacct
aatatgggtgccgtaaggaccaaaggtcctgttgtgcagtatacccaagaaccaagcagt
accactaccagcaccctggcaaaaccaacgtctacatcaactcaagcacaagggtcagca
gctgcatcagtctcaaccacaacaacttcacaagttcagaaaatccttcctaagacggat
tctccacagcctcagcagacaagaacagatagccctgacagtcaggtgtcatcacagagc
cgcaacaagcagcaggtagcaaagaaaagtacctcctccattcctcaacggacatcccct
tcatcatcaacaactgtacctgtagaaaatcaaacagttactcggacacttattccaact
tcgcatcctaggtatttcttactgcaaacaacaggtcccatacaacaggctatacccctg
cagcagccattacaacagcctgcacagcatcttcaaaatcctcagtcaacagtagtacag
caacagtcccagataacagtccaatcaacatctcaagtttaccattccatgagtgatcgt
attcctttagaaccatcttaccaggctcctacagagaagctgttctatgtaccacaccag
tgcagcccagcttgtcttgaccgcctacgaccccgaaagctggaccaatacagaagccgg
aacccactacttattccattgttgtatgacttccgacgtatgacgggacgccgacgagtc
aaccgcaaaatgtcattccatgttatctacaaagcaccttgtgggctgagccttcgcagc
atgcatgagattgagcgttatatatttgaggcccgatgtgattttgtttacttggagatg
ttctgcttagatccttatgttttggtggatcgacgctttcagcctcaaaaaccattttat
ttcattcgggatattacatatggaaaagaagatgtccctctttcttgtgttaatgaaata
gacatgacaccacctcccagtgttgcctacagtaaagaacgtatacctggtaagggagtt
tacataaacaccaatgcagattttttggtgggatgtgactgcactgatggatgcagagat
aggtctaagtgtgcttgccaccaactgactttactggcaacagcttgtacaccaggagga
cagataaatgcacatgccggataccaaaataaaagacttgaagagtgtcttcctaccggg
gtatatgaatgcaataaacgctgcaagtgtaaccatcagatgtgtaccaaccgcctggta
caacatggtttgcaagtgagacttcagctttttaagacacaaaataagggttggggtatt
cgttgtttggacgatattgccaaaggttcctttgtctgcatttatgcaggtaaaatatta
acagatgattttgcagacaaggaaggcttggaaatgggtgatgaatattttgccaatctt
gactacattgagagtgtagagaatttcaaagagggatatgaaagtgatgccaagtgttcc
tctgatggcagtggtgtagacattaaaggtggaagcaatgcaggtgatgggggtgcagat
gatggagatggacaaggtgaagaaaatagcagctcagaggaaaatgaagaagaagattcg
aatgaagatgatgatgatgatagttcagatgacaatttttgtaaagacgagtaccttagt
gccagttcagtttggcgcagttatgctacgcgaaggcaaactcgtggaatgaaggaaggg
ggtggtgcttcccaagataacaaagagagtctgtcaagacagactagtcaagatgacagc
aagccacctatatcagaagagactggaaagaataaggtggcatcctggctgagctccaac
agcattgattgttcttctgttgattctgatagtcgttcttcgtttaaaatgggagatgca
aagaaggagctaggtgcagaaaaaacttcctctttgtcatcttccaaaatcaagcaagaa
ggccccgagatcgatgttaagcagttcaaaaaggaacttaagatagataaggattctgat
gagcagaagtccacatcggtgtatgaaagtcctcgagcctccacaaagggcgagggtatt
cgccgcccactcacaaagccaaacttttttcaaaaccgcaggaactctggagcacagcaa
agcgctgatgatgtaatgacactttctagctctgatagcgaaggaggaaggaaaagaaga
agcagtgcagctcaaaacacaggcaatgatagtgatgatatccagacgatatcgtctggg
tctgaagaggaggacaagaaggagaacaatggagtagccgatagtacagggccagttaag
cgccaggtagctgtgaaatcaacccgtggctttgctctcaagtctacacatgggattgca
atcaaaacaagcaatatggtttcttcagacaaaggagatggagctactgcatggaaaaat
actaggcagttttatgacggcgaagaatcctgctacatcatcgatgccaaacttgaaggc
aatcttggccgctacctcaatcatagctgcagccccaatctttttgtccagaatgtcttt
gtggacactcatgatctgagatttccttgggttgcattctttgctagcaagaggatccgt
gctgggactgagttaacctgggactataactacgaggtgggtagcgtggaggggaaggag
ctgctgtgctgctgcggctccactgagtgccggggacgtcttctgtga
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integrated database retrieval system
