Polypterus senegalus (gray bichir): 120540544
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Entry
120540544 CDS
T08668
Symbol
fbn1
Name
(RefSeq) fibrillin-1
KO
K06825
fibrillin 1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04350
TGF-beta signaling pathway
psex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
120540544 (fbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120540544 (fbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
psex00536
]
120540544 (fbn1)
Glycosaminoglycan binding proteins [BR:
psex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120540544 (fbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
EGF
FXa_inhibition
TB
hEGF
EGF_3
Fibrillin_U_N
Plasmod_Pvs28
EGF_FBN_1st
Motif
Other DBs
NCBI-GeneID:
120540544
NCBI-ProteinID:
XP_039627315
LinkDB
All DBs
Position
12:complement(153235746..153496539)
Genome browser
AA seq
2532 aa
AA seq
DB search
MRPGWMLTLFVGFAAVRYSSGKADEGAADPDVVKASEPRASRAKRKGGVQDVLKGPNVCG
SHYNAYCCPGWKTLSGGNQCIVPICRSSCGDGFCSRPNMCTCTNGQLAPSCGSKSVQHCN
IRCMNGGSCAEDQCLCQKGYIGQHCGQPVCENGCSNGGRCVAPNRCACTYGFTGTQCERD
YRTGPCFSSVNNQMCQGQLTGIVCTKTLCCATVGRAWGHPCEMCPAQPHPCRRGFIPNIR
SGACQDVNECEAIPGLCHGGNCINTVGSFECKCPAGHRFNEVTQKCEDVDECLTVPSVCD
VGECSNTIGSYVCNCPQGYYSPPDRSRCIDARGGHCYLSLLNGRCGNEQQQTKTKTQCCC
DSGRCWAYVGIPEMCPMRGTEEYRKLCASLPDLYPPNGRPIPPDQQPYPPDSRPLPPDSR
PLPPDSRPYPPDSRPYPPDSRPYPPDSRPLPDWQPDGRYPIVPQNISDACQRYRNLCLNG
RCIPIPGSYRCECNMGFRLDIRGECIDDDECERNPCANADCINTQGSYFCQCHSGFQSTA
TRTECRDLDECVANGRICNNGRCVNTEGSFHCVCNAGFEVTADKKNCADLDECLIRNICL
NGMCINEDGSFKCICKSGFQLSANGRFCTDINECEVPGICMNGRCVNTEGSYRCECLPGL
AVSLDGRVCVDTHMRSTCYRGYSRGQCITPFNGAFTKSTCCCFNTEFAFGEPCQPCPALN
TGEFLALCPHGVGRSSTGEDINECLLDPDICQYGVCENLIGSYRCKCNPGYEVDYTGKTC
TDIDECSLRSQLCDNGLCRNTPGSYSCSCQKGYVFKPETEVCEDINECESNPCVNADCKN
TPGSFFCECALGSTLDESKTVCVETSKGTCWLKISNGRCEININGETLRSHCCSTVGAAW
GSPCTPCVPDPYCRRGFARVKGTTCQDVNECEVFPDICTNGRCENTDGSFICRCLPGMTL
DSTGRVCIDTRKEVCYSKHEDERCSAPLFGKHLLSSCCCSIGAAWGPECDECPEKGSPEY
LQICPRGPGFSTKDDFGGKPVLKDINECKMIPNLCTNGKCRNTIGSFKCKCDGGFALDAE
ERNCTDIDECRISPDVCGHGSCVNTLGDFECKCLEGYESGFMMMKNCMDIDECERNPLLC
RGGECTNTQGSFQCVCPPGHEVSVDGSACLDVNECGLSDNLCRNGQCVNAAGKFYCVCNT
GYSSTVDRLSCVDIDECTIQNGGCEAFCTNSEGSYECSCRVGFALMPDQRSCTDIDECED
NPEICDGGQCTNLPGEYRCLCYDGFMSSEDMKTCLDVDECELNPEICLSGNCENTKGSFI
CHCDLGYSVKKGTTGCTDINECEIGAHNCDRHATCTNTPGSFKCRCSTGWIGNGIKCTDL
DECSNGTHMCSAHGECKNTMGSYRCVCKEGYSGDGFICSDVDECAENINLCDHGHCLNIP
GGYRCDCEMGFAPTLDKTECQDIDECGFSEICVFGTCHNLPGFYRCECDTGYELDKTGGN
CTDVNECNDPTTCISGVCVNTPGSYICNCPPDFRLNPTGVGCVDTRIGNCFLDYRQRGDA
SDVYECNTEIGVGVNKATCCCSQGRAWGTPCQLCPAVNSSDYKILCPGGEGFRPNPITVI
LEDINECQELPGLCQGGRCINTFGSFQCECPRGYYLSEETRVCEGFMKTCQDIDECAITS
NYCIFGTCTNTLGSFRCQCSDGFELSPNGRICIDMRIHFCYTKFENGQCSTPKSKNITKR
DCCCSALPGEGWGSPCEICPKRGEETYGTFCNEAFQQHPSLPPPDIDECSSDPELCMNGE
CINTDGSYRCECGFGFTLDPGNTRCEDTDECSVGNPCGNGTCTNVVGAFECTCDEGFEPG
PMMTCEDVNECALNPLLCAFRCVNTYGSYECKCPAGYVLREDRRMCRDQDECEDGIHDCE
TRGMLCKNLIGTYMCICPSGFVRSSDGEKCIDKNECQAKPGVCENGRCINTVGSYRCDCH
EGFIASSTQTECIDNRQGFCFTEVLQNMCQMTSSNRNAVTKSECCCDGGRGWGPNCEICP
LTGTAQYKKMCPRGPGYTTDGKDIDECRVIGGLCRNGVCVNNEGSFSCICKAGYTTDISG
TGCMDLDECAQSPKPCNFICKNTEGSYLCSCPRGYILQEDGRSCRDLDECSTKQHNCQFL
CVNTIGGFTCKCPPGFTQHHTSCIDNNECSSDPSLCGSKGVCKNSPGSFSCECQRGFLLD
SNGGSCKDVDECDGNHRCQHGCQNLAGSYRCGCPQGYLQHYQWNQCIDENECLNSHICGG
ASCRNTLGSFHCVCPTGFQYEQFNGGCQDVNECSTTQNPCSYGCMNTDGGYLCGCPTGYY
RAGQGHCVSGVGFGKGGQLMPAAEETDDNALSPEACYECKINGYPKKGRRRRSVNGTEPE
AQADLQEEQSPVSMASLDIDNQLVFNFTISDLRKKEHILEFVPALTTMTNHVRYSIESGN
DDGFFKINQKEGISYLHLTKKKPQAGAYSLQINSSSLYKRKELELLESKHDKDYLSGELG
ENLKMKILIVLH
NT seq
7599 nt
NT seq
+upstream
nt +downstream
nt
atgaggccggggtggatgctaaccctttttgtgggatttgcggctgtccgatattcttct
ggcaaagccgatgaaggtgcagcggatccagacgtggtgaaagccagcgaaccacgcgcc
agcagagccaagagaaagggaggcgtccaggatgtgctaaagggaccaaatgtttgtgga
tcacactacaatgcctactgctgtccaggatggaaaaccctgtcaggtggaaaccagtgc
atcgtcccaatttgccgaagctcctgtggtgatggcttctgctcccgacccaacatgtgt
acttgcaccaatggccagctagcaccctcctgtggatcaaagtcagttcaacactgcaat
atcaggtgcatgaatggaggctcctgtgccgaagaccagtgcttgtgccagaaggggtac
attggacaacactgcggccagcccgtctgtgaaaatggatgttcgaacggaggaagatgc
gtggctccaaaccgctgtgcttgtacctacggatttactgggacacagtgtgagagagat
taccgcaccgggccctgcttctcctccgtaaacaatcagatgtgccagggccagctcacc
ggcatcgtctgcaccaagaccctctgctgtgccacagtgggacgagcctggggacacccc
tgcgagatgtgtccagcccagccgcacccgtgtcgccgaggcttcatccccaacatccgc
tcaggagcctgtcaagatgtaaatgagtgtgaagccatacccggcctctgtcatggagga
aactgcataaacacggtgggatcctttgagtgcaagtgcccagccggccatcgatttaat
gaagtgacgcagaagtgtgaagatgttgacgagtgtctcactgtcccttccgtctgtgat
gtgggagaatgttcaaacaccattggaagctacgtctgcaattgcccgcaggggtactac
tcccctcctgacaggtcccgatgcatcgatgcccgcggaggacattgctatttaagcttg
ttgaacggtcgctgtggcaatgagcaacaacagaccaagacgaaaactcagtgctgttgt
gacagtggacgatgctgggcttacgtagggattcctgaaatgtgccccatgcgtggaaca
gaggaatacagaaagctctgcgccagtcttccagacttgtacccacctaatggacgtccc
attcctcctgaccagcagccttatcctccagatagtcggccactgcccccggatagtcgg
ccactgcctcccgatagtcggccatacccgccagacagccggccatatcctccagacagt
cggccataccctccagatagtcgacctcttccagattggcaaccagatgggcgctaccct
atcgttccacaaaatatatccgatgcctgccagagatatcgaaacctgtgcctgaatggc
cgctgtattccgatacctgggagctatcgatgtgaatgcaatatgggatttaggctggac
atcaggggcgagtgcattgatgatgatgaatgcgaacgaaatccctgcgccaatgccgac
tgtatcaatactcaaggatcatatttctgccagtgccattctggctttcagtctacagcc
acgaggacagagtgccgggatctcgacgagtgtgtggcaaatggaagaatctgtaacaac
ggccgctgtgttaacacagagggaagtttccactgtgtgtgcaatgcaggatttgaggtg
actgcggacaagaagaactgcgcagacttggacgaatgcctcatcaggaatatctgcctc
aacgggatgtgcattaacgaagatggcagcttcaaatgtatttgcaaatctggcttccag
ttgtcagcaaacgggaggttttgcacagacatcaacgagtgtgaagtaccaggcatctgc
atgaatggacgctgtgtgaacactgaaggctcctaccgatgtgaatgtcttccaggcctg
gctgtcagtctggatggtcgtgtctgtgttgacacgcacatgcgcagcacctgttacaga
gggtactcgaggggccagtgcatcacgcctttcaacggcgccttcaccaagtccacctgc
tgctgtttcaacaccgagtttgcctttggagagccttgccagccgtgcccagccctgaac
acaggtgaattcctggctctttgtcctcacggagttggccgttcatctaccggagaagat
ataaatgagtgcctcctggaccctgacatctgccaatatggagtctgtgaaaacttaatt
ggctcctaccggtgcaagtgcaacccaggatatgaagtggactatactggaaaaacctgc
actgatatcgacgagtgcagtttgcgtagtcaactgtgtgacaacgggctctgcagaaac
acgcctggaagttacagttgctcctgtcagaagggctacgtattcaaaccggagaccgaa
gtctgcgaagacatcaatgagtgcgagtctaatccctgcgtcaatgcggactgtaagaac
acccccggctcgtttttttgtgaatgtgccctggggagcacgctggatgaatccaaaact
gtttgcgttgaaaccagcaaagggacctgctggctgaagatcagcaatggccgatgtgag
attaacatcaacggagagacgctcaggtctcattgctgttccactgtgggggcggcctgg
ggaagcccttgtacgccgtgtgtaccagacccgtactgcagaagaggctttgcaagagtc
aaagggacaacatgccaagatgtcaatgaatgtgaagtatttcctgacatctgcaccaat
gggcgatgtgaaaatacggatggctccttcatttgtcgatgtcttcctggaatgactctg
gatagcaccgggagggtctgtatcgatacacgcaaggaagtgtgttactcaaagcacgaa
gatgaacgctgctccgctccattatttggcaagcatctgctgagctcgtgctgctgctca
attggcgctgcttggggtccagagtgcgacgaatgtccagagaaaggcagtccagagtac
ttgcagatctgccctcgggggcccggcttttccacgaaggatgactttggtgggaagcca
gttctgaaagatatcaatgagtgtaagatgattccaaacttgtgcaccaacggcaagtgc
agaaacaccatcggcagcttcaagtgcaaatgtgacggcggctttgcgttggacgctgaa
gaaagaaactgcacagatatcgacgagtgccgaatttcacccgatgtctgtggccacggc
tcctgtgtcaacacgctaggagacttcgaatgcaagtgtctggaaggctatgagagtggc
tttatgatgatgaaaaactgcatggatatcgacgagtgtgaaaggaatccactgttgtgc
cgtggcggcgagtgcaccaacacccaagggagcttccagtgtgtctgtcctccgggccac
gaggtttcagtcgatggatctgcctgtttagatgttaatgagtgtggactgagtgacaat
ctttgtaggaatggccagtgtgtgaatgcggctggaaaattctattgtgtgtgtaacacc
ggatacagctcgacggtggaccgcttgtcatgcgtagatattgacgagtgcaccatacag
aatggcggatgtgaagccttttgcaccaattcggaaggcagctacgagtgcagctgtcgg
gtcgggtttgccctgatgcccgatcagaggagctgtacagacatcgacgagtgtgaagac
aacccagagatctgcgatggcggacagtgtaccaaccttcctggcgaataccgctgtctg
tgttacgatggattcatgtcgtctgaagatatgaaaacgtgcctggatgtcgacgagtgt
gaactcaatccagaaatctgcctcagtgggaactgtgagaacaccaaaggttccttcatt
tgccactgcgacttgggctactcggtgaagaaagggacgacaggttgtacagatatcaat
gagtgtgagattggcgcccataactgcgatcgtcacgcgacttgcaccaacacgcccggg
agcttcaagtgccgatgtagcaccggatggattgggaatggaatcaaatgcacagatttg
gatgagtgctcaaatggcacccacatgtgcagcgctcatggcgaatgcaagaacaccatg
ggctcgtatcgatgtgtctgcaaggaaggctattccggagatggcttcatctgctcagat
gttgatgagtgtgctgagaatataaatctgtgtgaccacggccactgtctcaacattccc
ggtgggtaccgttgtgactgtgagatgggcttcgctccgacattggacaaaacagaatgc
caagatatcgatgaatgtggtttctctgaaatctgcgtctttgggacatgtcataacctt
ccaggattttaccgatgtgagtgcgacacgggatatgagctggataaaaccggtgggaac
tgcacagatgtcaacgaatgcaacgatcctacgacttgcatcagcggagtgtgtgtcaac
acgcctggcagctacatctgcaattgtcctccagattttagactcaacccaactggtgtt
ggctgcgttgacactcgaatagggaattgcttcctggattacaggcaaagaggagacgcc
tccgatgtttatgagtgcaacactgaaattggcgttggagtcaataaagccacctgctgc
tgttcacaaggccgagcctggggtaccccgtgccagttgtgcccagcagtcaattcctcg
gattacaaaatcctgtgtcctggtggcgaaggcttccgaccgaacccaatcaccgtcatc
ttggaagatatcaatgaatgccaggaactgccaggcttgtgccaaggtggccggtgcatt
aacacctttggcagtttccagtgtgaatgcccaagaggatactacctaagtgaagagaca
cgggtgtgcgaaggtttcatgaaaacatgtcaagatatcgacgagtgtgccatcacctcc
aactactgcatctttggcacctgcaccaacacacttgggagtttcaggtgtcagtgttca
gatggctttgagttgtcaccaaatggaagaatatgcatagatatgagaatacacttctgc
tatacgaagtttgaaaacggacagtgctctactccgaaatctaagaacataaccaagagg
gattgctgttgcagtgcattaccaggcgaaggctggggtagtccttgtgaaatctgccct
aaacgtggagaagaaacatacggcacattttgtaatgaagctttccagcaacatccctca
cttccacctcctgatatagatgagtgctcatctgatccagagctctgtatgaatggagaa
tgcatcaacacagatgggtcttaccgatgtgaatgtggatttggcttcactctggacccc
ggtaacaccaggtgtgaagatacagatgagtgctccgtgggcaacccctgtggtaatggc
acctgtaccaatgtcgtcggagcattcgaatgcacgtgcgatgaaggctttgaacccgga
cctatgatgacttgtgaagatgtcaatgaatgtgctctgaatcccctgctctgtgccttc
cgatgtgtgaacacatatggctcctatgaatgcaagtgtccagcaggctacgttctccgc
gaggaccgacgaatgtgccgagatcaagatgaatgtgaagacggaatccatgattgtgaa
accaggggaatgttgtgtaaaaatttaatcggcacgtacatgtgcatctgcccttctggt
tttgtgcgctcgtcagatggagagaagtgtatcgataaaaatgaatgtcaagctaaacct
ggggtctgtgaaaatggccgatgtatcaacactgtaggcagttacagatgtgactgtcat
gaaggattcatagccagcagcacacagacagaatgcattgacaaccgccaaggcttctgt
tttactgaagtccttcagaatatgtgccagatgacttcaagcaaccgcaacgcggtcaca
aagtcagaatgttgctgcgatggagggcgtggatggggacccaactgtgaaatctgcccc
ctgactggcaccgcgcagtataaaaagatgtgcccacgcggccctggctacacgacggat
ggcaaagatattgacgagtgccgtgtcattggaggtctttgtcgaaatggagtgtgcgta
aataacgagggatccttcagctgcatttgtaaggctggttacaccacagacatctcagga
acaggctgcatggatctggacgagtgcgctcagtcgcccaaaccttgcaatttcatctgt
aagaacacagaaggcagctacttgtgctcctgtccgagaggctacattctgcaagaagat
ggaaggagctgcagggatctcgatgagtgctctactaagcagcacaactgtcagttcctg
tgtgtcaacactatcggtgggtttacatgcaaatgccctcctggcttcacacagcatcac
accagctgtatcgacaacaatgaatgttcttctgacccatcactgtgcggctctaagggg
gtctgcaagaattcgcctggcagtttcagctgcgagtgccaacgaggcttcctgttggat
tccaacggagggagctgtaaagatgtggacgaatgtgatggaaaccatcgatgtcagcat
ggctgccagaacctggctggtagctaccggtgcggctgtcctcaggggtaccttcaacat
taccagtggaatcagtgcatcgatgagaacgaatgtctcaattcacacatttgtggggga
gcctcatgccgaaatacgcttggcagtttccactgtgtctgccctactggattccagtat
gaacagtttaatgggggatgccaggatgtgaacgagtgctccacgactcagaacccctgc
tcgtatggctgcatgaacaccgatggtggctacctctgcggatgtccaactgggtactac
agggctggacaagggcactgtgtatctggtgttggttttggaaaaggaggacaattaatg
ccagcagctgaagaaacagatgacaatgcactttcaccagaggcctgttatgagtgtaaa
attaatggttatcccaagaagggcagaagacgaaggagtgtcaatgggacagaacccgag
gctcaagctgacttgcaggaggagcaaagcccggtcagcatggcaagcctggacatcgac
aaccagcttgtgtttaacttcaccatcagcgacttgagaaagaaggagcacattttggag
tttgtacccgccctcaccacgatgaccaaccacgtgcgatactcgattgagagcggcaac
gatgatggcttctttaaaatcaatcagaaggagggaatcagttatctgcatctgaccaag
aagaaacctcaggctggagcctactccttacaaatcaacagttcctcgctgtataaaagg
aaggaactggagctcctggaaagcaaacacgacaaagactacctcagcggtgagcttggc
gaaaacctgaaaatgaaaatactcattgttcttcattaa
DBGET
integrated database retrieval system
