KEGG   Polypterus senegalus (gray bichir): 120540810
Entry
120540810         CDS       T08668                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:psex00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    120540810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:psex03000]
    120540810
   04121 Ubiquitin system [BR:psex04121]
    120540810
   03036 Chromosome and associated proteins [BR:psex03036]
    120540810
Enzymes [BR:psex01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     120540810
Transcription factors [BR:psex03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    120540810
Ubiquitin system [BR:psex04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     120540810
Chromosome and associated proteins [BR:psex03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    120540810
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     120540810
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like F-box JHD JmjC Cupin_8 Rubredoxin
Other DBs
NCBI-GeneID: 120540810
NCBI-ProteinID: XP_039627809
LinkDB
Position
12:complement(63590484..63683528)
AA seq 1328 aa
MWPCEASHEGLNWLKADESFKIKKTKKIKRKKMEAHAESRRRLQRSIGRRMYDENDDLSD
VEEIANIRGFDLEDKLKSEAYNLSYVDRMDGKDFNYEYVQREGLRIPLIFKAKDGLGIKM
PDPEFTVSEVKGLVGSRRAVDVMEVSTQKGMEMSMAQFVRYYTTPEAERDKLFNVISLEF
SHTKLENLIKRPIVIDLVDWVDNIWPRHLKDKQIDATNILSEMKYPKVQKYCLMSVKGCY
TDFHIDFGGTSVWYHVHRGGKVFWLIPPTPHNLDLYEEWVLSGKQSDIFLGDQADGCQRV
ELKQGYTFFIPSGWIHAVYTLEDTLVFGGNILHSFNIPMQLTVHDIENRTKVHAKFRYPF
YYEMCWYVLERYVYCLTKRSHLNKDFQRESMLIDAERKQSTESFSSDSRLEMDEESCDTP
VKEECADGLEKCDKSSIDGPHSPGSVLPETKDKKIKPTPTRHLKRTLSNESDDSTKSNTA
MDFPKTPSGSPVSETSNKWTHLTEFELKGLKALVEKLESLPENKMCVPEGIEDPQALLED
MKVVLKEHSEDDANLAITGVPVVCWPKKTAKQKSGGRPKGKLGASTAVKLAANRTTAGAR
RRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGE
AGKEDTVDQEEEKFNIMLMECSICNEIVHPGCLKVKDAGGVVNEELPNCWECPVCNHAGK
TGKAYKQKRGPGFKYASNLPGSLLKEQRVNKDVKEENDSTTPVKRKVEPEDGLKRKSEEP
PKKRAAPLPADALLRSNSEETPLKKKRKPLDKSADPTVRKRRRSLKSSDDRVAIPKPLRQ
LKSEEDDDDDEDEDDKEEDEDDNAGEKDNEEMEEDLPETPLKSLATRESDQSQSSSPRAG
PSCESGTELQEKNKARVRRKRRLPSKELSKELSKELNQEIQKTEDCLANENCQPLKSEPE
SENEEPKRPLSNSTACSERLHQSPREMNGTPRELSHNQQLSPLGVSKSPLGTPVSARPPP
SRSPPKCMQMERHVIRPPPISPPPDSLPLDDGEAHVMRREVWMAVFSYLSHKELCVCMSV
CKTWNRWCCDKRLWTKIDLNRCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRL
PGLRVLLLAGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQIDN
RSKLRNVVDLRLAGLDITDASLRLIIRHMPLLSRLDLSYCNHITDQSINILTAVGTTTRD
SLTEINLSVCTRVTDQCLTYFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGLLE
EKLLRKLS
NT seq 3987 nt   +upstreamnt  +downstreamnt
atgtggccgtgtgaggccagccatgagggcctaaactggttaaaagctgacgaaagcttc
aaaattaaaaaaacaaaaaaaattaaaaggaaaaaaatggaggcgcacgctgaatctcga
cgccgactgcagcgctctattggcagaagaatgtatgatgaaaatgatgacctgtcagat
gtggaggaaattgccaacatccgggggtttgatttggaagataaactgaaaagtgaagct
tataatttatcttatgtggatcgcatggatgggaaagattttaattatgagtatgttcaa
agagaaggccttaggattcctctcatattcaaagccaaagatgggttaggaatcaaaatg
cctgatcctgaatttacggtcagtgaagtgaaagggttagtaggcagccgacgagctgtg
gatgtgatggaagtcagcacacaaaaaggcatggagatgagcatggctcagtttgttcga
tactacacaactcctgaggccgaacgagacaagcttttcaatgtcattagtctggagttt
agccacactaagcttgaaaacctgatcaagcgccccatagtgattgacttggtggactgg
gtggacaacatttggccacggcatttgaaagataagcaaattgatgccactaatatactc
tctgaaatgaaatatcccaaagtgcagaaatactgtttgatgagtgtcaagggctgctac
actgacttccatattgattttgggggcacttctgtatggtatcacgttcacagagggggc
aaggtcttttggctgattcctccaacacctcacaatttggacttgtatgaggagtgggtc
ttatctggaaagcaaagtgacatttttctgggtgatcaagcagatgggtgccaaagggtt
gagctgaaacaaggttacacattcttcattccatcaggatggattcatgctgtttacacc
ttggaggataccctggtgtttggtgggaacattctccatagctttaacattcccatgcag
ctaactgtccatgatattgaaaatagaacaaaggttcatgcaaaattccgctatcctttc
tactatgagatgtgctggtatgtcttagaaagatatgtgtactgcctaaccaagcgctct
cacctaaataaggacttccaaagggaatcgatgctaattgatgcagagagaaagcaaagc
accgagagtttctcttcagattctcgactagaaatggatgaagaatcctgtgacactccg
gtgaaagaagaatgtgctgatggcctggagaagtgtgacaagtcctcaatagatggacca
cattctcctggtagtgtgcttcctgaaacaaaagacaagaaaattaagcctactcctaca
cggcacttaaagcgaacactgtccaacgagtctgacgacagcacaaagtcaaatacagcc
atggattttccaaaaactccgtcaggttccccagtttctgaaacctcaaacaaatggact
catttgacagagtttgaactgaaaggcttgaaggcactggtggagaagcttgaatcttta
ccagagaataaaatgtgtgttcctgaaggcattgaggatccccaggctttgttagaagat
atgaaggtagttttgaaagagcatagtgaagatgatgcaaaccttgccattacaggagtg
cctgttgtttgctggcccaaaaaaactgctaagcaaaagtctgggggacgaccgaaaggt
aagcttggagcatcaacagcagtcaagctggcagcaaaccggaccacagcaggggcccgc
cggagacggacaaggtgccgaaagtgtgaagcatgtttacggacagagtgtggggagtgt
cacttctgtaaggacatgaagaaatttgggggcccgggaagaatgaagcagtcctgtatc
atgaggcagtgtattgctcctgtgcttccccatactgcagtttgccttgtttgtggtgaa
gcagggaaggaggataccgttgatcaagaggaggagaagtttaatatcatgttgatggag
tgctccatttgcaatgagattgtgcatccaggctgcctcaaggtaaaagatgcaggtggt
gtagtgaacgaggagcttccaaactgttgggaatgcccagtctgcaaccatgctggaaaa
actgggaaagcctacaagcaaaagagaggcccagggtttaagtacgcgtccaacctgccg
ggttcactactgaaggagcagagagtgaacaaggatgtgaaggaggaaaatgattcaact
actcctgtgaaaagaaaagtggaacctgaagatggcctaaagcggaaatctgaggaacca
cctaagaaacgagcagcaccattgccggcagatgccttgcttagaagcaattctgaggag
acaccattaaaaaagaaaagaaagccattggacaagagtgcagacccaacagttaggaag
aggaggaggtccttgaaatcctcggatgacagagttgcgattccaaagcctttacgacag
cttaaatcggaagaagatgatgatgacgacgaagatgaagatgacaaagaggaagatgaa
gatgataatgctggagagaaagacaacgaagagatggaagaggatcttcctgaaacacct
ttaaagtccctagcaactagagaaagtgatcagtctcagtcaagctctcctcgagctggt
cctagctgtgaaagtggcactgaactgcaagaaaagaataaagcacgggtgaggaggaaa
cgcaggcttcccagcaaagaactaagcaaggagctgagtaaagagctcaatcaggagatc
caaaaaactgaggactgtttggcaaatgaaaactgccaacctttaaaatctgagcccgag
agtgagaatgaggagcctaaaagacccctgagcaatagtacagcatgcagtgaaaggcta
catcagagtccaagagaaatgaatggaactcccagagagctaagtcataaccagcagctc
tctcctcttggggtcagtaagagtccacttggcaccccggtttctgcacgtccccctcca
tctcgctcgcctcctaaatgcatgcagatggaacgccatgtgatccggccaccacctatc
agcccgccccctgactccctgcccctggatgatggggaggctcatgtgatgcgcagggaa
gtgtggatggctgtattcagctacctctctcacaaagaactgtgtgtctgtatgagtgtc
tgcaagacatggaacagatggtgttgcgacaagcggctgtggactaaaatcgatctcaat
cgatgtaaatccatcactccacttatgctcagtggaataatcagaaggcaacctgtgtca
ttagacttaagttggacaaacatatcaaagaaacagttaagctggcttattaatcgatta
ccaggtcttcgggtgctgctgctagcaggctgttcatgggtggcagtttctgcactttgt
acctccagttgccctttgctgcgaactctggatgtccagtgggtagaaggtttaaaagat
gctcaaatgagagacctgctttctcctccaacagataacaggccaggacaaatagacaat
cgaagtaaactcagaaatgttgtagacttgcgtctggcaggattggatattactgatgct
tcgcttcgtcttattatcagacacatgcctttactttcacgattggatctcagttactgt
aaccacataactgaccagtctattaacattttaactgctgtaggaactacaactcgggat
tctctaacagagattaatctgtcagtttgcactagggttactgaccagtgcctgacctac
ttcaaacgctgtgggaacatctgtcacattgacttgcggtactgcaaacaagtcacgaag
gagggctgtgaacagttcatagcagagatgtctgtaagcgtacagtttggactgttagag
gaaaagctgctgcgaaaactcagctag

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