Pseudomonas shahriarae: HU773_019895
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Entry
HU773_019895 CDS
T07642
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03030
DNA replication
pshh03410
Base excision repair
pshh03420
Nucleotide excision repair
pshh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU773_019895 (ligA)
03410 Base excision repair
HU773_019895 (ligA)
03420 Nucleotide excision repair
HU773_019895 (ligA)
03430 Mismatch repair
HU773_019895 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pshh03032
]
HU773_019895 (ligA)
03400 DNA repair and recombination proteins [BR:
pshh03400
]
HU773_019895 (ligA)
Enzymes [BR:
pshh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU773_019895 (ligA)
DNA replication proteins [BR:
pshh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU773_019895 (ligA)
DNA repair and recombination proteins [BR:
pshh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU773_019895 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU773_019895 (ligA)
MMR (mismatch excision repair)
DNA ligase
HU773_019895 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU773_019895 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Tla3_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QXH87907
LinkDB
All DBs
Position
complement(4485282..4487639)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ
RVGSAALSAFTQVRHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLQGAGWPATLEVRG
EVFMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DTHIGNLQQLQKWGMPISHELKLAKGIEDCLAYYRDIGERRNSLPYEIDGVVFKVNSIAY
QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVTERRPENARAVQIPESCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYKLKYEQIIDLEGFADVSSKKLIAAIENSKTPTLARFIYALGIPDVGEET
AKVLARSLASLERVQRALPEVLTYLPDVGLEVAHEIHSFFEDGHNQQVIGALLSPDECAL
VLQDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADRFGSLEGVIQADWLDMRQAL
PEKQAKAVREFFDNPDNAHRALAIEQQLKDFGMHWQSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKAKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAS
HNIPL
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccacacccgcattctcgagctgcgcgctgaactggatcagcacaactac
cgttaccacgtactcgacgagccgagcattccggacgccgaatacgaccggctgttccac
gaactcaaggcgctggaagccgagcacccggacctggtgactcgcgactcaccgacgcag
cgggtcggcagtgcggcgctgtcggcctttacccaggtgcgtcacgagatcccgatgctc
agcctgggcaacgcctttgatgaaaccaccatgctggagtttgatcgccgcgttaccgag
ggtctcgacctgccggtgggcgatctgtttggcggtggtgcggcggtggaatacagctgc
gaacccaagctcgatggcctggcggtcagcctgctgtatcaggatggcgagttggtgcgc
ggcgcgacccgtggcgacggcaccacgggcgaagacatcagcgtgaatgtgcgcaccgtg
cgcaatatcccgctgaaactgcagggcgcgggctggccggcgacgctggaagtgcgcggt
gaagtgttcatgtccaaggccggtttcgagcgtttgaacgccacgcaactggaagtcggc
ggcaagaccttcgccaacccgcgtaacgcggcggcgggcagcctgcgccaactcgactcg
aagatcaccgccagtcgccccctggagttctgctgctatggcgtgaccacggacatcagc
gacacccatatcggcaacctgcagcagttgcagaagtggggcatgcccatcagccacgag
ttgaagctggccaaggggattgaggattgcctggcgtactaccgcgacatcggtgagcgg
cgtaacagcctgccctatgaaatcgacggtgtggtgttcaaggtcaacagcatcgcctat
cagcgtgaactgggctttcgcgcccgcgagccgcgctgggccatcgcccataagtttccg
gcgatggaagaactgactgaattgctcgacgttgaattccaggtcggccgcaccggcgcg
gtgacgccggtggcgcgcttgaagccggtcaaggtggcgggagtcaccgtatccaatgcg
acattgcacaacatggacgaagtggcgcgcctgggcttgatgatcggtgacaccgtgatc
atccgccgtgccggtgatgtgatcccacaggtcgtgtcggtggttaccgagcgtcgcccg
gaaaatgcccgcgccgtgcagatcccggaaagctgcccggtgtgcggttcccatgtggag
cgcacgcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgagggcgcggtgtat
cgctgtgtcgggcgcctggcctgtggtgcgcagctcaagcaggcgattatccattttgtc
tcgcgccgggccatggatatcgacggcctgggcgacaagaccatcgagcagttggtcgat
gagaaactcatcggctcgccggcggacctgtacaagctcaagtacgaacagatcatcgac
ctggaaggcttcgccgatgtttccagcaagaaactgatcgccgccatcgaaaacagcaag
accccaaccctggcgcggttcatctacgccctgggtattcccgatgtgggtgaggaaacc
gccaaggtcctggcgcgttccctggcgtccctggagcgtgtgcagcgggcgttgccggaa
gtgctgacgtacttgccggatgtgggcctggaagtggcgcacgagatccacagcttcttt
gaagacgggcacaaccagcaggtgatcggcgcgctgctgtcgccggacgagtgcgcgctg
gtcttgcaggaccagggtgagctgagtgccgagttcgctgccagtaccaccctgggcggc
ctgctcgacaagttgcatgtaccttccgtggggccgggagccgcgcagaagctggcggac
aggtttggctccctggagggtgttatccaggccgattggctggatatgcgccaggcgctg
ccggagaagcaggccaaggccgtgcgtgagttcttcgataacccggacaatgcccatcgt
gcgctggccatcgagcagcagctcaaggacttcggcatgcattggcagagcgagaagaag
gtggttgaaggcttgcccgaggcggggcatacctgggtgctgaccggctcgctggaattg
atgagtcgcgacgtggccaaggcaaagctcgaaagcctgggggccaaggtggcgggttcg
gtctcggcgaagacccattgcgtggtcgccgggccgggtgccggctcgaaactggccaag
gccagcgagctggggctgaaggtcctggacgaagaggcttttgtcgccttcctggccagc
cataacattcccctctga
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