Pseudomonas shahriarae: HU773_026100
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Entry
HU773_026100 CDS
T07642
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03030
DNA replication
pshh03410
Base excision repair
pshh03420
Nucleotide excision repair
pshh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU773_026100 (ligB)
03410 Base excision repair
HU773_026100 (ligB)
03420 Nucleotide excision repair
HU773_026100 (ligB)
03430 Mismatch repair
HU773_026100 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pshh03032
]
HU773_026100 (ligB)
03400 DNA repair and recombination proteins [BR:
pshh03400
]
HU773_026100 (ligB)
Enzymes [BR:
pshh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU773_026100 (ligB)
DNA replication proteins [BR:
pshh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU773_026100 (ligB)
DNA repair and recombination proteins [BR:
pshh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU773_026100 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU773_026100 (ligB)
MMR (mismatch excision repair)
DNA ligase
HU773_026100 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU773_026100 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QXH89068
LinkDB
All DBs
Position
5806784..5808466
Genome browser
AA seq
560 aa
AA seq
DB search
MMTPRLLTYLLLMLFPIVAWAQGCPDWQADKARDEITALQRQIDLWDDSYHRLGQSLVSD
ELYDQARMRLEQWRTCFAQAPSPAQNPLASSRGTVAHPVPHTGLEKLVNDRAVADWIGTR
SDLWIQPKVDGVAVSLVYRGGRLAQVISRGDGLFGHDWTDSARKIPGLVQQLPEAIDLLL
QGELYWRLDAHIQGETGGMNARSKISGLMNRQHLNDADAAGIGLFVWAWPQGPADLKQQL
DTLAHWGFTDSRRYSQPIDTFEQARHWRAFWHGHPLPFATDGVVLHQSQRAPAERWQAST
PYWAVAWKYPFITALAHVRQVQFKIGRTGRITPVLELHPVMLDDRQIKRVSIGSLKRWQQ
LDIRPGDQVSISLAGQVIPRLDQVILRSYPRVDVAAPVAGDFHHLSCLRLAPACEEQLLA
RLTWLSGKQGLDLPHIGRETWNSLIQAGQISGLVDWLNLDETELATIDGFGDRSTTRLLA
SLQTARQRPFAQWLMALGVPPTARNNLVGGWHALAARDTQAWQAEAGIGPGRAAQLSAFF
RDPQVVAMSETLRAAGIDGF
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgatgacaccacgcctgctgacctacctgctattgatgctcttccctatcgtcgcttgg
gcgcagggctgcccggactggcaagccgacaaggcccgggacgaaatcaccgccctgcaa
cgacaaatcgacctctgggacgacagctaccaccgactcggccaatccctggtcagcgac
gagctctatgaccaggcccgcatgcgcctggagcaatggcggacttgctttgcacaggcg
ccgtcacctgcgcaaaatcccctggccagctcgcggggcactgtcgcccatcccgtcccg
cacacgggccttgaaaagttggtcaacgaccgcgccgtggcagactggatcggcacacgc
agcgacctgtggatacaacccaaggtcgatggggtggccgtgagcctagtctatcgtggg
ggtcgcctggcccaggtgatcagccgcggcgacggcctgttcggccatgactggacggac
tcggcccgcaagatccccggccttgtgcaacaactgcccgaggccatcgacctgctcttg
cagggtgagctgtactggcgcctggacgcccatatacaaggggagacgggcggcatgaat
gcccgcagcaaaatctccgggctgatgaaccgccaacacctcaatgacgccgacgccgcc
ggcatcggcctgtttgtctgggcctggccgcaagggccggcggacctcaagcagcagttg
gacacccttgcacactggggttttaccgacagccgtcgctacagccagcccatcgacacc
ttcgagcaggcccgtcactggcgagcgttctggcatgggcaccctttgcccttcgccact
gatggcgtggtgctgcatcaaagccagcgcgccccggccgaacgctggcaggccagtacg
ccttactgggctgttgcctggaaatacccgttcatcacagccctggcccatgtgcgccag
gtgcagttcaagatcggccgcaccggccgtatcaccccggtcctggaactgcacccggta
atgctcgacgatcgccagatcaagcgcgtcagcatcggctcgttgaaacgctggcaacag
ctcgatatccggcccggcgaccaagtgtccatcagccttgccggccaagtgattcccagg
ctcgaccaggtcatcctgcgcagctatccacgggtcgatgtcgcggccccggtggcgggc
gacttccatcacctgagctgcttgcgtctggccccggcctgcgaggagcaactgctggcc
cgactgacctggctcagtggcaagcaggggctggatctgccacacattggccgcgagacc
tggaactccttgatccaggccggtcaaatcagcggtttggtggattggttgaaccttgat
gagacagagcttgctaccattgacggattcggcgaccgcagcacgacgcgcctgcttgcg
agcctgcagaccgcacgtcagcgaccgttcgctcaatggctgatggcgctgggggttcca
ccgaccgcccgcaataacctggtgggtggctggcatgccctggccgcccgcgacacgcaa
gcctggcaggccgaggcaggaatcggcccgggacgcgcggcgcagttgagcgcctttttt
cgcgaccctcaggtggtggccatgagcgaaacactacgggctgccgggatcgacggcttt
tag
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