Plesiomonas shigelloides: SAMEA2665130_0714
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Entry
SAMEA2665130_0714 CDS
T04378
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03030
DNA replication
pshi03410
Base excision repair
pshi03420
Nucleotide excision repair
pshi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA2665130_0714 (ligA)
03410 Base excision repair
SAMEA2665130_0714 (ligA)
03420 Nucleotide excision repair
SAMEA2665130_0714 (ligA)
03430 Mismatch repair
SAMEA2665130_0714 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pshi03032
]
SAMEA2665130_0714 (ligA)
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_0714 (ligA)
Enzymes [BR:
pshi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAMEA2665130_0714 (ligA)
DNA replication proteins [BR:
pshi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMEA2665130_0714 (ligA)
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAMEA2665130_0714 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA2665130_0714 (ligA)
MMR (mismatch excision repair)
DNA ligase
SAMEA2665130_0714 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA2665130_0714 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
SBT60272
LinkDB
All DBs
Position
1:791311..793323
Genome browser
AA seq
670 aa
AA seq
DB search
MAKTIAQQILALRAELRHHEYLYYVLDQPSVPDAEYDRLMQQLRALEESHPELITADSPT
QRVGGKALTGFAQVQHEVPMLSLDNAFDAEDFLAFQKRVTDRLGDATALTYSCEPKLDGL
AVSILYVDGVLTQAATRGDGTTGEDITANVRTIRNVPLRLSGDYPPRLEVRGEVFMTRDG
FERLNEQAQRRGDKTFANPRNAAAGSLRQLDSNITAQRPLAFNAYGLGVVEGARLPDSHV
ARLQYLQALGIPVSQEVRQVTGGEAVIDYYHAIQAKRDQLNFDIDGVVIKVDALALQDEL
GFVARAPRWAVAIKFPAQEEITQVRDVEFQVGRTGAITPVAKLDPVFVGGVTVSNATLHN
ADEITRLGLMIGDYVVIRRAGDVIPKIASVVLERRPEQVHAVTFPSQCPVCQSAVERIEG
EAVARCSGGLICPAQRKEALRHFASRRALDIEGMGEKIVDQLVERELVHTPADLFRLSLA
ELTRLERMGPKSAQKLLNAINHAKQTTFARFLYALGIREVGEATAANLADHFTTLDALRA
ADIEQLQAVPDVGTVVATHIYHFLREPHNDSVIEDLLALGVNWPDAIKPQVAGESLFSGK
TVVLTGTLTQMSRDEAKSRIQAMGGKVTGSVSAKTDFLIAGEAAGSKLTKAQSLGITILT
EDEFLSQFAN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaccatcgcacaacagattttggcattgcgcgcagagctgcgtcaccacgaa
tacctttactatgttctggatcagccgtcagtccctgatgcggaatatgaccgcttgatg
cagcaattacgcgcgttggaagagtcgcacccagagctcatcactgcggattcgccaaca
cagcgggtcggcggcaaggcgctcaccggttttgcacaggtacagcatgaagtgccgatg
ttgtcgctggataatgcctttgatgccgaagactttttggcatttcaaaagcgggttacc
gatcgtttaggcgatgccaccgcgctgacctattcttgtgagccgaagcttgatgggctg
gcggtcagtattttgtatgttgatggcgtattgactcaagccgcgacccgaggcgatggc
actactggtgaagatatcacagccaacgtacgcaccatccgcaatgtgcctttacgctta
agtggcgattatccaccgcgtctagaagtgcgtggcgaagtgtttatgacccgtgacgga
tttgagcgcttaaacgagcaggcccagcgccgcggggacaaaacctttgctaacccacgt
aatgctgctgccggctcactgcgtcagttagacagcaatatcaccgcgcaacggccatta
gccttcaatgcctatggtttgggtgttgttgagggcgctaggctgccggacagccacgtt
gcacgtttgcaatatctacaagctttagggatcccagtcagccaagaagtgcgtcaagtc
accggcggtgaagcggtgattgattattaccacgcgattcaggccaaacgcgaccagctg
aattttgatattgatggcgttgtgatcaaggtcgatgcgttagcgctgcaagatgaattg
ggctttgtagctcgcgcgccacgttgggctgttgccatcaaattccccgcacaagaagag
atcacgcaggtgcgcgatgttgagtttcaggtcgggcgtaccggcgcaatcacgccagtg
gctaagcttgatccggtgtttgtcggcggcgtgacggtcagtaatgccaccttgcataat
gccgatgagataactcgtctgggcttaatgattggcgattatgtggtgatccgccgtgcc
ggcgatgtgatccctaaaattgctagcgtggtgctggagcggcgcccagagcaggtgcac
gcagtgacattcccatctcaatgccctgtgtgccagtcagctgtcgagcgtattgaaggc
gaggcggttgctcgctgcagcggcggcctgatttgtccggcgcagcgcaaagaggctctg
cgccattttgcgtcacgccgagcgctggatatcgaagggatgggtgagaagattgtcgat
cagctcgttgaacgtgagttggtacatacgccggctgatttattccgtctatctttagcc
gagctgacgcgcttggagcgcatggggccgaagtcggcgcaaaagctactcaacgctatt
aatcatgccaaacagacgacgttcgctcgttttctgtatgccctgggtatccgtgaggtg
ggcgaggcgactgccgcaaacctagccgatcactttacaacgctcgatgctctgcgcgct
gccgatattgaacagctacaagcagtacctgacgtaggtacggtggtggctacgcatatc
tatcatttcctgcgtgagccacataatgacagcgtgattgaggatttgttggccttaggt
gtgaactggccggatgccattaaaccgcaagtcgccggcgagtcactgttcagtggtaaa
accgtggtattgaccggcaccttgacacaaatgagccgtgacgaggcgaaaagtcggatt
caagccatgggcggtaaagtgactggtagcgtatcagcgaaaaccgattttctgatcgca
ggtgaggcggcgggctcaaagttaaccaaagcacagtcgttagggatcaccattctcact
gaagatgagtttttatcccaattcgcgaattaa
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integrated database retrieval system
